INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.

INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
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DOI:
10.1093/nar/gkm218
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发表时间:
2007-07
影响因子:
14.9
通讯作者:
Backofen R
Backofen R
中科院分区:
生物学2区
文献类型:
--
作者:
Busch A;Backofen R

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INFO-RNA是一个新的网络服务器,用于设计折叠成用户给定二级结构的RNA序列。此外,可以指定对序列的约束,例如可以将序列位置限制为固定的核苷酸或一组核苷酸。此外,用户可以允许在某些位置违反约束,这在复杂情况下可能是有利的。INFO-RNA网络服务器允许生物学家以自动方式设计RNA序列。它是清晰直观的安排和易于使用。该程序非常快速,因为大多数应用程序都在几秒钟内完成,并且比其他现有工具更好,更快。INFO-RNA网络服务器可在http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/上免费获得
INFO-RNA is a new web server for designing RNA sequences that fold into a user given secondary structure. Furthermore, constraints on the sequence can be specified, e.g. one can restrict sequence positions to a fixed nucleotide or to a set of nucleotides. Moreover, the user can allow violations of the constraints at some positions, which can be advantageous in complicated cases. The INFO-RNA web server allows biologists to design RNA sequences in an automatic manner. It is clearly and intuitively arranged and easy to use. The procedure is fast, as most applications are completed within seconds and it proceeds better and faster than other existing tools. The INFO-RNA web server is freely available at http://www.bioinf.uni-freiburg.de/Software/INFO-RNA/
DOI: 10.1093/bioinformatics/btl194
发表时间: 2006-08-01
期刊: BIOINFORMATICS
影响因子: 5.8
作者:
Busch, Anke;Backofen, Rolf
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DOI: 10.1093/nar/26.4.896
发表时间: 1998-02-15
影响因子: 14.9
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通讯作者: Engelberg-Kulka, H
DOI: 10.1105/tpc.105.039834
发表时间: 2006-05-01
期刊: PLANT CELL
影响因子: 11.6
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DOI: 10.1006/jmbi.1997.1377
发表时间: 1997-11-21
影响因子: 5.6
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通讯作者: Pardi, A