EBImage--an R package for image processing with applications to cellular phenotypes.

EBImage--an R package for image processing with applications to cellular phenotypes.
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DOI:
10.1093/bioinformatics/btq046
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发表时间:
2010-04-01
期刊:
Bioinformatics (Oxford, England)
影响因子:
--
通讯作者:
Huber W
Huber W
中科院分区:
其他
文献类型:
--
作者:
Pau G;Fuchs F;Sklyar O;Boutros M;Huber W

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摘要:EBImage提供了用于图像的阅读、写入、处理和分析的通用功能。此外,在基于显微镜的细胞分析中,EBImage提供了分割细胞和提取定量细胞描述符的工具。这允许使用R编程语言自动化这些任务,并使用R环境中的现有工具进行信号处理,统计建模,机器学习和数据可视化。供货情况:EBImage是免费和开源的,在LGPL许可下发布,可从Bioconductor项目(http://www.bioconditor.org/packages/release/bioc/html/EBImage.html)获得。联系人:gregoire. ebi.ac.uk
Summary: EBImage provides general purpose functionality for reading, writing, processing and analysis of images. Furthermore, in the context of microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and use of existing tools in the R environment for signal processing, statistical modeling, machine learning and data visualization. Availability: EBImage is free and open source, released under the LGPL license and available from the Bioconductor project (http://www.bioconductor.org/packages/release/bioc/html/EBImage.html). Contact: gregoire.pau@ebi.ac.uk
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