Vivaldi: visualization and validation of biomacromolecular NMR structures from the PDB.
Vivaldi: visualization and validation of biomacromolecular NMR structures from the PDB.
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DOI：
10.1002/prot.24213
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发表时间：
2013-04
期刊：
影响因子：
2.9
通讯作者：
Kleywegt GJ
中科院分区：
文献类型：
--
作者：
Hendrickx PM;Gutmanas A;Kleywegt GJ
We describe Vivaldi (VIsualization and VALidation DIsplay; http://pdbe.org/vivaldi), a web-based service for the analysis, visualization, and validation of NMR structures in the Protein Data Bank (PDB). Vivaldi provides access to model coordinates and several types of experimental NMR data using interactive visualization tools, augmented with structural annotations and model-validation information. The service presents information about the modeled NMR ensemble, validation of experimental chemical shifts, residual dipolar couplings, distance and dihedral angle constraints, as well as validation scores based on empirical knowledge and databases. Vivaldi was designed for both expert NMR spectroscopists and casual non-expert users who wish to obtain a better grasp of the information content and quality of NMR structures in the public archive. © Proteins 2013. © 2012 Wiley Periodicals, Inc.
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影响因子：
2.7
作者：
Doreleijers JF;Vranken WF;Schulte C;Lin J;Wedell JR;Penkett CJ;Vuister GW;Vriend G;Markley JL;Ulrich EL
通讯作者：
Ulrich EL
影响因子：
14.9
作者：
Kinjo AR;Suzuki H;Yamashita R;Ikegawa Y;Kudou T;Igarashi R;Kengaku Y;Cho H;Standley DM;Nakagawa A;Nakamura H
通讯作者：
Nakamura H
DOI：
10.1107/s0108767307035623
发表时间：
2008-01-01
影响因子：
1.8
作者：
Berman, Helen M.
通讯作者：
Berman, Helen M.
DOI：
10.1107/s0907444909042073
发表时间：
2010-01
期刊：
Acta crystallographica. Section D, Biological crystallography
影响因子：
--
作者：
Chen VB;Arendall WB 3rd;Headd JJ;Keedy DA;Immormino RM;Kapral GJ;Murray LW;Richardson JS;Richardson DC
通讯作者：
Richardson DC
影响因子：
14.9
作者：
Finn RD;Mistry J;Tate J;Coggill P;Heger A;Pollington JE;Gavin OL;Gunasekaran P;Ceric G;Forslund K;Holm L;Sonnhammer EL;Eddy SR;Bateman A
通讯作者：
Bateman A