Prediction of Sphingosine protein-coding regions with a self adaptive spectral rotation method
Prediction of Sphingosine protein-coding regions with a self adaptive spectral rotation method
复制标题
利用自适应光谱旋转方法预测鞘氨醇蛋白编码区
DOI：
10.1371/journal.pone.0214442
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发表时间：
2019-04
期刊：
影响因子：
3.7
通讯作者：
Zhu Hu
中科院分区：
文献类型：
--
作者：
Li Zhongwei;Guan Yanan;Yuan Xiang;Zheng Pan;Zhu Hu
Identifying protein coding regions in DNA sequences by computational methods is an active research topic. Welan gum produced by Sphingomonas sp. WG has great application potential in oil recovery and concrete construction industry. Predicting the coding regions in the Sphingomonas sp. WG genome and addressing the mechanism underlying the explanation for the synthesis of Welan gum metabolism is an important issue at present. In this study, we apply a self adaptive spectral rotation (SASR, for short) method, which is based on the investigation of the Triplet Periodicity property, to predict the coding regions of the whole-genome data of Sphingomonas sp. WG without any previous training process, and 1115 suspected gene fragments are obtained. Suspected gene fragments are subjected to a similarity search against the non-redundant protein sequences (nr) database of NCBI with blastx, and 762 suspected gene fragments have been labeled as genes in the nr database.
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DOI：
10.1109/ccaa.2017.8229816
发表时间：
2017-05
期刊：
2017 International Conference on Computing, Communication and Automation (ICCCA)
影响因子：
--
作者：
Sanyogita Sharma;Kanika Sandal;P. Garg;Sunil Datt Sharma
通讯作者：
Sanyogita Sharma;Kanika Sandal;P. Garg;Sunil Datt Sharma
DOI：
10.1093/dnares/dsp002
发表时间：
2009-04
期刊：
DNA research : an international journal for rapid publication of reports on genes and genomes
影响因子：
--
作者：
Frenkel FE;Korotkov EV
通讯作者：
Korotkov EV
影响因子：
3.1
作者：
J. Stankowski;S. Zeller
通讯作者：
J. Stankowski;S. Zeller
影响因子：
2.6
作者：
Yoon BJ
通讯作者：
Yoon BJ
DOI：
10.5120/11489-7194
发表时间：
2013-04
期刊：
International Journal of Computer Applications
影响因子：
--
作者：
H. Saberkari;M. Shamsi;Hamed Heravi;M. Sedaaghi
通讯作者：
H. Saberkari;M. Shamsi;Hamed Heravi;M. Sedaaghi