InterProScan: protein domains identifier.

InterProScan: protein domains identifier.
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DOI:
10.1093/nar/gki442
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发表时间:
2005-07-01
影响因子:
14.9
通讯作者:
Lopez R
Lopez R
中科院分区:
生物学2区
文献类型:
--
作者:
Quevillon E;Silventoinen V;Pillai S;Harte N;Mulder N;Apweiler R;Lopez R

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InterProScan (E。M. Zdobnov和R. Apweiler(2001)生物信息学,17,847-848]。J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bradley, P. Bork, P. Bucher, L. Cerutti等。(2005)核酸研究,33,D201-D205]。在撰写本文时,应用程序中有10个不同的公开可用数据库。蛋白质和DNA序列都可以被分析。学术和商业组织可以从EBI访问基于web的版本()。此外,一个独立的Perl版本和一个SOAP Web服务[J]。Snell, D. Tidwell和P. Kulchenko(2001)用SOAP编程Web服务,第1版。O'Reilly Publishers, Sebastopol, CA,]也可供用户使用。支持各种输出格式,包括文本表、XML文档以及各种图形,以帮助解释结果。
InterProScan [E. M. Zdobnov and R. Apweiler (2001) Bioinformatics, 17, 847–848] is a tool that combines different protein signature recognition methods from the InterPro [N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bradley, P. Bork, P. Bucher, L. Cerutti et al. (2005) Nucleic Acids Res., 33, D201–D205] consortium member databases into one resource. At the time of writing there are 10 distinct publicly available databases in the application. Protein as well as DNA sequences can be analysed. A web-based version is accessible for academic and commercial organizations from the EBI (). In addition, a standalone Perl version and a SOAP Web Service [J. Snell, D. Tidwell and P. Kulchenko (2001) Programming Web Services with SOAP, 1st edn. O'Reilly Publishers, Sebastopol, CA, ] are also available to the users. Various output formats are supported and include text tables, XML documents, as well as various graphs to help interpret the results.
DOI: 10.1093/nar/gkh044
发表时间: 2004-01-01
影响因子: 14.9
作者:
Hulo, N;Sigrist, CJA;Bairoch, A
通讯作者: Bairoch, A
DOI: 10.1093/nar/gkh097
发表时间: 2004-01-01
影响因子: 14.9
作者:
Wu, CH;Nikolskaya, A;Barker, WC
通讯作者: Barker, WC
DOI: 10.1093/nar/gki034
发表时间: 2005-01-01
影响因子: 14.9
作者:
Bru C;Courcelle E;Carrère S;Beausse Y;Dalmar S;Kahn D
通讯作者: Kahn D
DOI: 10.1093/bioinformatics/17.9.847
发表时间: 2001-09-01
期刊: BIOINFORMATICS
影响因子: 5.8
作者:
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通讯作者: Apweiler, R
DOI: 10.1073/pnas.85.8.2444
发表时间: 1988-04-01
影响因子: 11.1
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通讯作者: LIPMAN, DJ