Mitochondrial phylogeny and comparative mitogenomics of closely related pine moth pests (Lepidoptera: Dendrolimus)

Mitochondrial phylogeny and comparative mitogenomics of closely related pine moth pests (Lepidoptera: Dendrolimus)
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密切相关的松蛾害虫（鳞翅目：松毛虫）的线粒体系统发育和比较有丝分裂基因组学

DOI：
10.7717/peerj.7317
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发表时间：
2019-07
期刊：
PeerJ
影响因子：
2.7
通讯作者：
A.B. Zhang
A.B. Zhang
中科院分区：
生物学3区
文献类型：
--
作者：
Qin J.;J. Li;Q. Gao;J.J. Wilson;A.B. Zhang

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背景松毛虫，松毛虫属。（Lasiocampidae）是针叶林的重要经济害虫。6个近缘种（马尾松毛虫Dendrolimus punctatus，D.油松D. Escherichia，D. superans、黑腹拟步行虫D. houi，和D. kikuchii）在中国发生，对针叶植物造成严重危害。松毛虫属螨全基因组的获得对解决松毛虫属的系统发育关系和害虫防治提供理论支持具有重要意义。方法采用全基因组测序技术，对三种（D. superans、黑腹拟步行虫D. houi，和D. kikuchii）进行测序。对鳞翅目10个总科78种昆虫的完整有丝分裂基因组进行了系统发育分析。结果这三个物种的线粒体完整基因组长度分别为15，417、15，381和15，377 bp。基于完整的有丝分裂基因组，6种松毛虫的系统发育分析结果一致，形成了两个主要分支，一个分支包含D。Escherichiensis与D. punctatus + D. tabulaeformis和D. superans为姐妹群，另一个含有D. kikuchii和D. hui。对同源线粒体基因组进行了比较分析，结果表明非编码区比A+T丰富区更具变异性。线粒体核苷酸多样性在属内比属间变异大，其中tRNA串联区最保守，nd6基因变异最大。
Background Pine moths, Dendrolimus spp. (Lasiocampidae), are serious economic pests of conifer forests. Six closely related species (Dendrolimus punctatus, D. tabulaeformis, D. spectabilis, D. superans, D. houi, and D. kikuchii) occur in China and cause serious damage to coniferophyte. The complete mito genomes of Dendrolimus genus are significant to resolve the phylogenetic relationship and provide theoretical support in pest control. Methods The complete mitogenomes of three species (D. superans, D. houi, and D. kikuchii) were sequenced based on PCR-amplified with universal primers, which were used to amplify initial fragments. Phylogenetic analyses were carried out with 78 complete mitogenomes of lepidopteran species from 10 superfamilies. Results The complete mitochondrial genomes of these three species were 15,417, 15,381, and 15,377 bp in length, separately. The phylogenetic analyses produced consistent results for six Dendrolimus species based on complete mitogenomes, two major clades were formed, one containing D. spectabilis clustered with D. punctatus + D. tabulaeformis, and D. superans as the sister group to this three-taxon clade, the other containing D. kikuchii and D. houi. Comparative analyses of the congeneric mitochondrial genomes were performed, which showed that non-coding regions were more variable than the A+T rich region. The mitochondrial nucleotide diversity was more variable when compared within than among genus, and the concatenated tRNA region was the most conserved and the nd6 genes was the most variable.
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DOI： 10.4269/ajtmh.2005.72.347
发表时间： 2005-03-01
期刊： AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
影响因子： 3.3
作者：
Diaz, JH
通讯作者： Diaz, JH
Mitochondrial phylogenomics and genetic relationships of closely related pine moth (Lasiocampidae: Dendrolimus) species in China, using whole mitochondrial genomes.
使用全线粒体基因组研究中国近缘松蛾（Lasiocampidae：Dendrolimus）物种的线粒体系统发育学和遗传关系
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发表时间： 2015-06-04
期刊： BMC genomics
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DNA fingerprinting evidence for the phylogenetic relationship of eight species and subspecies of {\sl Dendrolimus} (Lepidoptera: Lasiocampidae) in China
DOI： --
发表时间： 2004
期刊： --
影响因子： --
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Aibing Zhang;X. Kong;Dianmo Li;You-Qiao. Liu
通讯作者： Aibing Zhang;X. Kong;Dianmo Li;You-Qiao. Liu
Order Lepidoptera Linnaeus, 1758. In : Zhang, Z.-Q. (Ed.) Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness
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发表时间： 2011-12
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E. J. van Nieukerken;L. Kaila;I. Kitching;Niels P. Kristensen;David C. Lees;J. Minet;C. Mitter;M. Mutanen;J. C. Regier;THOMAS J. Simonsen;Niklas Wahlberg;S. Yen;R. Zahiri;D. Adamski;J. Baixeras;Daniel Bartsch;Bengt Å. Bengtsson;John W. Brown;S. Bucheli;DONALD R. Davis;J. D. Prins;WILLY DE Prins;M. Epstein;Patricia Gentili-Poole;C. Gielis;P. Hättenschwiler;Axel Hausmann;Jeremy D. Holloway;A. Kallies;O. Karsholt;A. Kawahara;S. Koster;Mikhail V. Kozlov;J. Lafontaine;Gerardo Lamas;J. Landry;Sangmi Lee;Matthias Nuss;Kyu-Tek Park;C. Penz;J. Rota;A. Schintlmeister;B. C. Schmidt;J. Sohn;M. A. Solis;G. Tarmann;Andrew D. Warren;Susan Weller;R. Yakovlev;V. Zolotuhin;A. Zwick
通讯作者： E. J. van Nieukerken;L. Kaila;I. Kitching;Niels P. Kristensen;David C. Lees;J. Minet;C. Mitter;M. Mutanen;J. C. Regier;THOMAS J. Simonsen;Niklas Wahlberg;S. Yen;R. Zahiri;D. Adamski;J. Baixeras;Daniel Bartsch;Bengt Å. Bengtsson;John W. Brown;S. Bucheli;DONALD R. Davis;J. D. Prins;WILLY DE Prins;M. Epstein;Patricia Gentili-Poole;C. Gielis;P. Hättenschwiler;Axel Hausmann;Jeremy D. Holloway;A. Kallies;O. Karsholt;A. Kawahara;S. Koster;Mikhail V. Kozlov;J. Lafontaine;Gerardo Lamas;J. Landry;Sangmi Lee;Matthias Nuss;Kyu-Tek Park;C. Penz;J. Rota;A. Schintlmeister;B. C. Schmidt;J. Sohn;M. A. Solis;G. Tarmann;Andrew D. Warren;Susan Weller;R. Yakovlev;V. Zolotuhin;A. Zwick