LMSD: LIPID MAPS structure database.

LMSD: LIPID MAPS structure database.
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DOI:
10.1093/nar/gkl838
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发表时间:
2007-01
影响因子:
14.9
通讯作者:
Subramaniam S
Subramaniam S
中科院分区:
生物学2区
文献类型:
--
作者:
Sud M;Fahy E;Cotter D;Brown A;Dennis EA;Glass CK;Merrill AH Jr;Murphy RC;Raetz CR;Russell DW;Subramaniam S

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脂类图谱结构数据库(LMSD)是一个包含生物相关脂类的结构和注释的关系型数据库。数据库中的脂类结构来自四个来源:(I)脂类图谱联合会的核心实验室和合作伙伴;(Ii)通过脂类图谱实验确定的脂类;(Iii)通过计算生成的适当脂类的结构;(Iv)从脂库、LIPIDAT和其他公共来源手动挑选的具有生物相关性的脂类。LMSD中的所有脂质结构都是以一致的方式绘制的。除了基于分类的脂类检索外,用户还可以使用基于文本或基于结构的搜索选项来搜索lmsd。基于文本的搜索实现支持通过以下数据字段的任意组合进行数据检索:脂类图ID、系统或通用名称、质量、配方、类别、主类和子类数据字段。基于结构的搜索与可选的数据字段相结合,提供了对用户绘制的结构执行子结构搜索或精确匹配的能力。搜索结果除了结构和注释外,还包括与外部数据库的相关链接。Lmsd已在以下网址公开提供
The LIPID MAPS Structure Database (LMSD) is a relational database encompassing structures and annotations of biologically relevant lipids. Structures of lipids in the database come from four sources: (i) LIPID MAPS Consortium's core laboratories and partners; (ii) lipids identified by LIPID MAPS experiments; (iii) computationally generated structures for appropriate lipid classes; (iv) biologically relevant lipids manually curated from LIPID BANK, LIPIDAT and other public sources. All the lipid structures in LMSD are drawn in a consistent fashion. In addition to a classification-based retrieval of lipids, users can search LMSD using either text-based or structure-based search options. The text-based search implementation supports data retrieval by any combination of these data fields: LIPID MAPS ID, systematic or common name, mass, formula, category, main class, and subclass data fields. The structure-based search, in conjunction with optional data fields, provides the capability to perform a substructure search or exact match for the structure drawn by the user. Search results, in addition to structure and annotations, also include relevant links to external databases. The LMSD is publicly available at
LMPD:脂质地图蛋白质组数据库。
DOI: 10.1093/nar/gkj122
发表时间: 2006-01-01
影响因子: 14.9
作者:
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发表时间: 1977-01-01
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发表时间: 1997-12-01
影响因子: 1.8
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