The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications.

The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications.
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DOI:
10.1186/1471-2105-6-21
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发表时间:
2005-02-06
期刊:
影响因子:
3
通讯作者:
Bourne PE
Bourne PE
中科院分区:
生物学4区
文献类型:
--
作者:
Moreland JL;Gramada A;Buzko OV;Zhang Q;Bourne PE

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目前生物科学中产生的大量数据不再能够通过传统的专业软件进行有效的探索和可视化。相反,需要新的功能来提供灵活性、快速的应用程序开发和部署,作为独立的应用程序或通过Web提供。我们描述了一个新的软件工具包-分子生物学工具包(MBT)-使快速开发的应用程序的蛋白质分析和可视化。该工具包是用Java编写的,因此提供了平台独立性和互联网交付能力。介绍了该工具包的几个应用程序,以说明可以实现的功能。MBT提供了组织良好的核心类分类,为生物结构的描述提供了统一的数据模型,并自动化了与分子科学应用程序开发相关的最常见任务(数据加载,典型结构信息的推导,序列和标准结构实体的可视化)。
The large amount of data that are currently produced in the biological sciences can no longer be explored and visualized efficiently with traditional, specialized software. Instead, new capabilities are needed that offer flexibility, rapid application development and deployment as standalone applications or available through the Web. We describe a new software toolkit – the Molecular Biology Toolkit (MBT; ) – that enables fast development of applications for protein analysis and visualization. The toolkit is written in Java, thus offering platform-independence and Internet delivery capabilities. Several applications of the toolkit are introduced to illustrate the functionality that can be achieved. The MBT provides a well-organized assortment of core classes that provide a uniform data model for the description of biological structures and automate most common tasks associated with the development of applications in the molecular sciences (data loading, derivation of typical structural information, visualization of sequence and standard structural entities).
DOI: 10.1002/bip.360221211
发表时间: 1983-01-01
期刊: BIOPOLYMERS
影响因子: 2.9
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