Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.
复制标题
二十年来的蛋白质组学标准倡议：当前的活动和未来工作。
DOI：
10.1021/acs.jproteome.2c00637
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发表时间：
2023-02-03
影响因子：
4.4
通讯作者：
Orchard, Sandra E.
中科院分区：
文献类型：
--
作者：
Deutsch, Eric W.;Vizcaino, Juan Antonio;Jones, Andrew R.;Binz, Pierre-Alain;Lam, Henry;Klein, Joshua;Bittremieux, Wout;Perez-Riverol, Yasset;Tabb, David L.;Walzer, Mathias;Ricard-Blum, Sylvie;Hermjakob, Henning;Neumann, Steffen;Mak, Tytus D.;Kawano, Shin;Mendoza, Luis;Van Den Bossche, Tim;Gabriels, Ralf;Bandeira, Nuno;Carver, Jeremy;Pullman, Benjamin;Sun, Zhi;Hoffmann, Nils;Shofstahl, Jim;Zhu, Yunping;Licata, Luana;Quaglia, Federica;Tosatto, Silvio C. E.;Orchard, Sandra E.
关键词：
人类蛋白质组组织（HUPO）蛋白质组学标准倡议（PSI）自20年前成立以来，已经成功地为蛋白质组学社区和其他领域开发了指南，数据格式和控制词汇表（cv）。在这里，我们描述了PSI的一般运作，包括其领导，工作组，年度研讨会，以及为了被批准为PSI标准而对提案进行彻底和公开审查的文件过程。我们简要描述了许多现有PSI标准的现状，其中一些与最初制定时保持一致，其中一些经历了后续修订，其中一些已经过时。然后描述了目前正在开发的一系列建议，并公开呼吁社区参与下一代标准的制定。最后，我们描述了与其他组织的一些协同作用和合作，并展望了PSI将如何继续促进数据的开放共享，从而加速蛋白质组学领域的进展。
The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. Here we describe the general operation of the PSI, including its leadership, working groups, yearly workshops, and the document process by which proposals are thoroughly and publicly reviewed in order to be ratified as PSI standards. We briefly describe the current state of the many existing PSI standards, some of which remain the same as when originally developed, some of which have undergone subsequent revisions, and some of which have become obsolete. Then the set of proposals currently being developed are described, with an open call to the community for participation in the forging of the next generation of standards. Finally, we describe some synergies and collaborations with other organizations and look to the future in how the PSI will continue to promote the open sharing of data and thus accelerate the progress of the field of proteomics.
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DOI：
10.1074/mcp.m113.034769
发表时间：
2014-01
期刊：
Molecular & cellular proteomics : MCP
影响因子：
--
作者：
Hebert AS;Richards AL;Bailey DJ;Ulbrich A;Coughlin EE;Westphall MS;Coon JJ
通讯作者：
Coon JJ
影响因子：
4.4
作者：
Deutsch EW;Perez-Riverol Y;Chalkley RJ;Wilhelm M;Tate S;Sachsenberg T;Walzer M;Käll L;Delanghe B;Böcker S;Schymanski EL;Wilmes P;Dorfer V;Kuster B;Volders PJ;Jehmlich N;Vissers JPC;Wolan DW;Wang AY;Mendoza L;Shofstahl J;Dowsey AW;Griss J;Salek RM;Neumann S;Binz PA;Lam H;Vizcaíno JA;Bandeira N;Röst H
通讯作者：
Röst H
影响因子：
14.9
作者：
Deutsch EW;Csordas A;Sun Z;Jarnuczak A;Perez-Riverol Y;Ternent T;Campbell DS;Bernal-Llinares M;Okuda S;Kawano S;Moritz RL;Carver JJ;Wang M;Ishihama Y;Bandeira N;Hermjakob H;Vizcaíno JA
通讯作者：
Vizcaíno JA
影响因子：
7.4
作者：
Bittremieux, Wout;Walzer, Mathias;Tabb, David L.
通讯作者：
Tabb, David L.
影响因子：
4.4
作者：
Deutsch, Eric W.;Lane, Lydie;Omenn, Gilbert S.
通讯作者：
Omenn, Gilbert S.