Whole-genome analyses resolve early branches in the tree of life of modern birds.
Whole-genome analyses resolve early branches in the tree of life of modern birds.
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DOI：
10.1126/science.1253451
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发表时间：
2014-12-12
期刊：
影响因子：
--
通讯作者：
Zhang G
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文献类型：
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作者：
Jarvis ED;Mirarab S;Aberer AJ;Li B;Houde P;Li C;Ho SY;Faircloth BC;Nabholz B;Howard JT;Suh A;Weber CC;da Fonseca RR;Li J;Zhang F;Li H;Zhou L;Narula N;Liu L;Ganapathy G;Boussau B;Bayzid MS;Zavidovych V;Subramanian S;Gabaldón T;Capella-Gutiérrez S;Huerta-Cepas J;Rekepalli B;Munch K;Schierup M;Lindow B;Warren WC;Ray D;Green RE;Bruford MW;Zhan X;Dixon A;Li S;Li N;Huang Y;Derryberry EP;Bertelsen MF;Sheldon FH;Brumfield RT;Mello CV;Lovell PV;Wirthlin M;Schneider MP;Prosdocimi F;Samaniego JA;Vargas Velazquez AM;Alfaro-Núñez A;Campos PF;Petersen B;Sicheritz-Ponten T;Pas A;Bailey T;Scofield P;Bunce M;Lambert DM;Zhou Q;Perelman P;Driskell AC;Shapiro B;Xiong Z;Zeng Y;Liu S;Li Z;Liu B;Wu K;Xiao J;Yinqi X;Zheng Q;Zhang Y;Yang H;Wang J;Smeds L;Rheindt FE;Braun M;Fjeldsa J;Orlando L;Barker FK;Jønsson KA;Johnson W;Koepfli KP;O'Brien S;Haussler D;Ryder OA;Rahbek C;Willerslev E;Graves GR;Glenn TC;McCormack J;Burt D;Ellegren H;Alström P;Edwards SV;Stamatakis A;Mindell DP;Cracraft J;Braun EL;Warnow T;Jun W;Gilbert MT;Zhang G
为了更好地确定现代鸟类的历史，我们使用用于处理基因组尺度数据的系统基因组学方法，对代表所有新鸟目的48种鸟类进行了基因组尺度的系统发育分析。我们找到了一棵高度确定的树，证实了之前有争议的姐妹或亲密关系。我们在新鸟类中发现了第一个分化，我们将这两个类群命名为雀鸟类（Passerea）和哥伦比亚鸟类（Columbea），它们代表了不同的、趋同进化的陆鸟和水鸟的独立谱系。在雀形目中，我们推断核心陆鸟的共同祖先是顶端捕食者，并证实了声音学习的独立增益。在哥伦比亚，我们认为鸽子和火烈鸟属于姐妹分支。即使有了完整的基因组，新鸟中一些最早的分支也很难解决，这最好的解释是，在大约6600万年前白垩纪-古近纪大灭绝事件发生后的一次快速辐射中，大量蛋白质编码序列趋同和高度不完整的谱系分类发生了。
To better determine the history of modern birds, we performed a genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves using phylogenomic methods created to handle genome-scale data. We recovered a highly resolved tree that confirms previously controversial sister or close relationships. We identified the first divergence in Neoaves, two groups we named Passerea and Columbea, representing independent lineages of diverse and convergently evolved land and water bird species. Among Passerea, we infer the common ancestor of core landbirds to have been an apex predator and confirm independent gains of vocal learning. Among Columbea, we identify pigeons and flamingoes as belonging to sister clades. Even with whole genomes, some of the earliest branches in Neoaves proved challenging to resolve, which was best explained by massive protein-coding sequence convergence and high levels of incomplete lineage sorting that occurred during a rapid radiation after the Cretaceous-Paleogene mass extinction event about 66 million years ago.
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影响因子：
5.4
作者：
Brown JW;Rest JS;García-Moreno J;Sorenson MD;Mindell DP
通讯作者：
Mindell DP
DOI：
10.1126/science.1254449
发表时间：
2014-12-12
期刊：
Science (New York, N.Y.)
影响因子：
--
作者：
Green RE;Braun EL;Armstrong J;Earl D;Nguyen N;Hickey G;Vandewege MW;St John JA;Capella-Gutiérrez S;Castoe TA;Kern C;Fujita MK;Opazo JC;Jurka J;Kojima KK;Caballero J;Hubley RM;Smit AF;Platt RN;Lavoie CA;Ramakodi MP;Finger JW Jr;Suh A;Isberg SR;Miles L;Chong AY;Jaratlerdsiri W;Gongora J;Moran C;Iriarte A;McCormack J;Burgess SC;Edwards SV;Lyons E;Williams C;Breen M;Howard JT;Gresham CR;Peterson DG;Schmitz J;Pollock DD;Haussler D;Triplett EW;Zhang G;Irie N;Jarvis ED;Brochu CA;Schmidt CJ;McCarthy FM;Faircloth BC;Hoffmann FG;Glenn TC;Gabaldón T;Paten B;Ray DA
通讯作者：
Ray DA
影响因子：
5.8
作者：
Bayzid, Md Shamsuzzoha;Warnow, Tandy
通讯作者：
Warnow, Tandy
影响因子：
2.1
作者：
FORBESWATSON, AD
通讯作者：
FORBESWATSON, AD
影响因子：
3.3
作者：
dos Reis M;Donoghue PC;Yang Z
通讯作者：
Yang Z