Synthesis of novel products in vitro by an RNA-dependent RNA polymerase

Synthesis of novel products in vitro by an RNA-dependent RNA polymerase
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通过 RNA 依赖性 RNA 聚合酶体外合成新产品

DOI:
--
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发表时间:
1995
影响因子:
5.4
通讯作者:
A. Simon
A. Simon
中科院分区:
医学2区
文献类型:
--
作者:
C. Song;A. Simon

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芜菁皱缩病毒感染芜菁的RNA依赖性RNA聚合酶在体外转录病毒相关卫星RNA sat-RNA C(356个碱基)的两条链。虽然正链和负链sat-RNA C都可以指导全长互补链产物的合成,但负链RNA的转录也产生两种非模板大小的产物,L-RNA和S-RNA(C. Song和A. E. Simon,Proc. Natl. Acad. Sci. USA 91:8792-8796,1994)。本文报道了L-RNA和S-RNA的合成是由模板3'末端的末端延伸引起的。L-RNA具有柄状结构,并且由与新合成的RNA共价连接的负链模板组成,所述新合成的RNA与其5' 190个碱基互补。S-RNA是由模板与其全长互补链共价连接而成。所有检测的负链模板均产生S-RNA。然而,L-RNA的合成受到负链模板的3'端或几个内部区域的缺失以及5'端附近或紧邻模板-产物连接上游的内部序列中的碱基改变的影响,这些碱基改变可能与3'端形成异源双链体。此外,破坏或恢复参与体内RNA重组的茎环的突变影响了体外产生的L-RNA的水平,这表明分子内形成柄状RNA和分子间RNA重组的机制涉及类似的特征。
RNA-dependent RNA polymerase from turnip crinkle virus-infected turnip transcribes both strands of a virus-associated satellite RNA, sat-RNA C (356 bases), in vitro. While both plus- and minus-strand sat-RNA C can direct the synthesis of full-length complementary-strand products, transcription of minus-strand RNA also generates two non-template-sized products, L-RNA and S-RNA (C. Song and A. E. Simon, Proc. Natl. Acad. Sci. USA 91:8792-8796, 1994). Here we report that synthesis of L-RNA and S-RNA results from terminal elongation of the 3' end of the template. L-RNA has a panhandle structure and is composed of minus-strand template covalently linked to newly synthesized RNA complementary to its 5' 190 bases. S-RNA is composed of template covalently linked to its full-length complementary strand. All minus-strand templates tested yielded S-RNA. However, synthesis of L-RNA was affected by deletion of the 3' end of the minus-strand template or several internal regions and base alterations near the 5' end or in an internal sequence immediately upstream from the template-product junction that could potentially form a heteroduplex with the 3' end. Furthermore, mutations that disrupted or restored a stem-loop involved in RNA recombination in vivo affected the level of L-RNA produced in vitro, suggesting that the mechanisms for intramolecular formation of panhandle RNAs and intermolecular RNA recombination involve similar features.
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DOI: --
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