WorldFlora: An R package for exact and fuzzy matching of plant names against the World Flora Online taxonomic backbone data.

WorldFlora: An R package for exact and fuzzy matching of plant names against the World Flora Online taxonomic backbone data.
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DOI:
10.1002/aps3.11388
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发表时间:
2020-09
影响因子:
3.6
通讯作者:
Kindt R
Kindt R
中科院分区:
生物学4区
文献类型:
--
作者:
Kindt R

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植物名称的标准化是生物学各个领域的关键步骤,包括生物多样性,植物地理学和植被研究。这里介绍的世界植物群软件包是为了帮助实现这一目标,它将植物名称列表与世界植物群在线(WFO)的静态副本进行匹配,WFO是一项正在进行的全球努力,旨在到2020年完成所有已知维管植物和branches的在线植物群。基于直接和模糊匹配,WorldFlora将来自WFO的匹配案例插入到包含分类名称的提交数据集。选择预期的最佳单匹配的结果和成功率,提出了四个数据集,包括两个数据集用于最近比较的软件工具,用于纠正分类单元名称。WorldFlora为半自动植物名称检查提供了一个简单的管道。对于四个数据集,可信匹配的成功率范围为94.7%至99.9%。
The standardization of plant names is a critical step in various fields of biology, including biodiversity, biogeography, and vegetation research. The WorldFlora package is introduced here to help achieve this goal by matching lists of plant names with a static copy from World Flora Online (WFO), an ongoing global effort to complete an online flora of all known vascular plants and bryophytes by 2020. Based on direct and fuzzy matching, WorldFlora inserts matching cases from the WFO to a submitted data set containing taxonomic names. The results and success rates for selecting the expected best single matches are presented for four data sets, including two data sets used in recent comparisons of software tools for correcting taxon names. WorldFlora offers a straightforward pipeline for semi‐automatic plant name checking. For the four data sets, the success rate of credible matches ranged from 94.7% to 99.9%.
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