The taxonomic name resolution service: an online tool for automated standardization of plant names.
The taxonomic name resolution service: an online tool for automated standardization of plant names.
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DOI：
10.1186/1471-2105-14-16
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发表时间：
2013-01-16
影响因子：
3
通讯作者：
Enquist BJ
中科院分区：
文献类型：
--
作者：
Boyle B;Hopkins N;Lu Z;Raygoza Garay JA;Mozzherin D;Rees T;Matasci N;Narro ML;Piel WH;McKay SJ;Lowry S;Freeland C;Peet RK;Enquist BJ
生物多样性数据的数字化正在导致大量使用多余、模糊或不正确的分类单元名称，导致记录不匹配和物种数量膨胀。拼写错误的名称和错误的分类法的最终后果是错误的科学结论和错误的政策决定。缺乏纠正这种“名称问题”的工具已经成为整合不同数据源和推进生物多样性科学进步的根本障碍。TNRS，或分类名称解析服务，是一个在线应用程序，用于自动化和用户监督的植物科学名称标准化。TNRS构建并扩展了现有的名称解析和模糊匹配的开源应用程序。名称是标准化的多个参考分类法，包括密苏里州植物园的热带数据库。TNRS能够在一次操作中处理数千个名称，它可以解析和纠正拼写错误的名称和权威机构，解释不同的拼写，并将命名同义词转换为公认的名称。可以包括姓氏以提高匹配精度并解决许多类型的同音异义词。高级分类群的部分匹配与注释、登录号和形态种的提取相结合，使TNRS能够在广泛的活动和遗留数据集上标准化分类。我们展示了TNRS如何解决多种形式的分类学语义异质性，纠正拼写错误，消除虚假的名称。因此，TNRS可以帮助整合不同的生物数据集。虽然TNRS的开发是为了帮助标准化植物名称，但其基本算法和设计可以扩展到所有生物和命名代码。TNRS可通过http://tnrs.iplantcollaborative.org/上的Web界面访问，并作为RESTful Web服务和应用程序编程界面。源代码可在https://github.com/iPlantCollaborativeOpenSource/TNRS/上获得。
The digitization of biodiversity data is leading to the widespread application of taxon names that are superfluous, ambiguous or incorrect, resulting in mismatched records and inflated species numbers. The ultimate consequences of misspelled names and bad taxonomy are erroneous scientific conclusions and faulty policy decisions. The lack of tools for correcting this ‘names problem’ has become a fundamental obstacle to integrating disparate data sources and advancing the progress of biodiversity science. The TNRS, or Taxonomic Name Resolution Service, is an online application for automated and user-supervised standardization of plant scientific names. The TNRS builds upon and extends existing open-source applications for name parsing and fuzzy matching. Names are standardized against multiple reference taxonomies, including the Missouri Botanical Garden's Tropicos database. Capable of processing thousands of names in a single operation, the TNRS parses and corrects misspelled names and authorities, standardizes variant spellings, and converts nomenclatural synonyms to accepted names. Family names can be included to increase match accuracy and resolve many types of homonyms. Partial matching of higher taxa combined with extraction of annotations, accession numbers and morphospecies allows the TNRS to standardize taxonomy across a broad range of active and legacy datasets. We show how the TNRS can resolve many forms of taxonomic semantic heterogeneity, correct spelling errors and eliminate spurious names. As a result, the TNRS can aid the integration of disparate biological datasets. Although the TNRS was developed to aid in standardizing plant names, its underlying algorithms and design can be extended to all organisms and nomenclatural codes. The TNRS is accessible via a web interface at http://tnrs.iplantcollaborative.org/ and as a RESTful web service and application programming interface. Source code is available at https://github.com/iPlantCollaborativeOpenSource/TNRS/.
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影响因子：
5.6
作者：
Goff SA;Vaughn M;McKay S;Lyons E;Stapleton AE;Gessler D;Matasci N;Wang L;Hanlon M;Lenards A;Muir A;Merchant N;Lowry S;Mock S;Helmke M;Kubach A;Narro M;Hopkins N;Micklos D;Hilgert U;Gonzales M;Jordan C;Skidmore E;Dooley R;Cazes J;McLay R;Lu Z;Pasternak S;Koesterke L;Piel WH;Grene R;Noutsos C;Gendler K;Feng X;Tang C;Lent M;Kim SJ;Kvilekval K;Manjunath BS;Tannen V;Stamatakis A;Sanderson M;Welch SM;Cranston KA;Soltis P;Soltis D;O'Meara B;Ane C;Brutnell T;Kleibenstein DJ;White JW;Leebens-Mack J;Donoghue MJ;Spalding EP;Vision TJ;Myers CR;Lowenthal D;Enquist BJ;Boyle B;Akoglu A;Andrews G;Ram S;Ware D;Stein L;Stanzione D
通讯作者：
Stanzione D
影响因子：
11.6
作者：
Kattge J;Díaz S;Lavorel S;Prentice IC;Leadley P;Bönisch G;Garnier E;Westoby M;Reich PB;Wright IJ;Cornelissen JH;Violle C;Harrison SP;Van Bodegom PM;Reichstein M;Enquist BJ;Soudzilovskaia NA;Ackerly DD;Anand M;Atkin O;Bahn M;Baker TR;Baldocchi D;Bekker R;Blanco CC;Blonder B;Bond WJ;Bradstock R;Bunker DE;Casanoves F;Cavender-Bares J;Chambers JQ;Chapin FS III;Chave J;Coomes D;Cornwell WK;Craine JM;Dobrin BH;Duarte L;Durka W;Elser J;Esser G;Estiarte M;Fagan WF;Fang J;Fernández-Méndez F;Fidelis A;Finegan B;Flores O;Ford H;Frank D;Freschet GT;Fyllas NM;Gallagher RV;Green WA;Gutierrez AG;Hickler T;Higgins SI;Hodgson JG;Jalili A;Jansen S;Joly CA;Kerkhoff AJ;Kirkup D;Kitajima K;Kleyer M;Klotz S;Knops JM;Kramer K;Kühn I;Kurokawa H;Laughlin D;Lee TD;Leishman M;Lens F;Lenz T;Lewis SL;Lloyd J;Llusià J;Louault F;Ma S;Mahecha MD;Manning P;Massad T;Medlyn BE;Messier J;Moles AT;Müller SC;Nadrowski K;Naeem S;Niinemets Ü;Nöllert S;Nüske A;Ogaya R;Oleksyn J;Onipchenko VG;Onoda Y;Ordoñez J;Overbeck G;Ozinga WA;Patiño S;Paula S;Pausas JG;Peñuelas J;Phillips OL;Pillar V;Poorter H;Poorter L;Poschlod P;Prinzing A;Proulx R;Rammig A;Reinsch S;Reu B;Sack L;Salgado-Negret B;Sardans J;Shiodera S;Shipley B;Siefert A;Sosinski E;Soussana JF;Swaine E;Swenson N;Thompson K;Thornton P;Waldram M;Weiher E;White M;White S;Wright SJ;Yguel B;Zaehle S;Zanne AE;Wirth C
通讯作者：
Wirth C
影响因子：
5.4
作者：
Harris, Eric S. J.;Erickson, Sean D.;Tolopko, Andrew N.;Cao, Shugeng;Craycroft, Jane A.;Scholten, Robert;Fu, Yanling;Wang, Wenquan;Liu, Yong;Zhao, Zhongzhen;Clardy, Jon;Shamu, Caroline E.;Eisenberg, David M.
通讯作者：
Eisenberg, David M.
影响因子：
8.8
作者：
Guralnick RP;Hill AW;Lane M
通讯作者：
Lane M
影响因子：
2.8
作者：
Dengler, Juergen;Jansen, Florian;Spencer, Nick
通讯作者：
Spencer, Nick