Cloud-scale RNA-sequencing differential expression analysis with Myrna.

Cloud-scale RNA-sequencing differential expression analysis with Myrna.
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DOI:
10.1186/gb-2010-11-8-r83
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发表时间:
2010
期刊:
影响因子:
12.3
通讯作者:
Leek JT
Leek JT
中科院分区:
生物学1区
文献类型:
--
作者:
Langmead B;Hansen KD;Leek JT

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随着测序通量接近每天数十千兆碱基,对用于分析转录组测序(RNA-Seq)数据的高效软件的需求日益增长。Myrna是一个云计算管道,用于计算大型RNA-Seq数据集中的差异基因表达。我们将Myrna应用于公共数据集的分析,并评估标准统计模型的拟合优度。Myrna可从http://bowtie-bio.sf.net/myrna获得。
As sequencing throughput approaches dozens of gigabases per day, there is a growing need for efficient software for analysis of transcriptome sequencing (RNA-Seq) data. Myrna is a cloud-computing pipeline for calculating differential gene expression in large RNA-Seq datasets. We apply Myrna to the analysis of publicly available data sets and assess the goodness of fit of standard statistical models. Myrna is available from http://bowtie-bio.sf.net/myrna.
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发表时间: 2010
期刊: Genome biology
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通讯作者: Oshlack A
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