Sustainable computational science: the ReScience initiative.

Sustainable computational science: the ReScience initiative.
复制标题

DOI:
10.7717/peerj-cs.142
复制
发表时间:
2017
期刊:
PeerJ. Computer science
影响因子:
--
通讯作者:
Zito T
Zito T
中科院分区:
其他
文献类型:
--
作者:
Rougier NP;Hinsen K;Alexandre F;Arildsen T;Barba LA;Benureau FCY;Brown CT;de Buyl P;Caglayan O;Davison AP;Delsuc MA;Detorakis G;Diem AK;Drix D;Enel P;Girard B;Guest O;Hall MG;Henriques RN;Hinaut X;Jaron KS;Khamassi M;Klein A;Manninen T;Marchesi P;McGlinn D;Metzner C;Petchey O;Plesser HE;Poisot T;Ram K;Ram Y;Roesch E;Rossant C;Rostami V;Shifman A;Stachelek J;Stimberg M;Stollmeier F;Vaggi F;Viejo G;Vitay J;Vostinar AE;Yurchak R;Zito T

文献摘要

参考文献

被引文献

相似文献

计算机科学为原型设计、编写、运行、测试、验证、共享和复制结果提供了大量的工具;然而,计算科学却落后了。在最好的情况下,作者可能会以压缩归档的形式提供他们的源代码,并且他们可能相信他们的研究是可复制的。但这并不完全正确。James Buckheit和David Donoho在二十多年前提出,关于计算结果的文章是广告,而不是学术研究。真正的学术是产生结果的完整的软件环境、代码和数据。这意味着新的工作流程,特别是在同行评审中。现有的期刊适应得很慢:很少请求源代码,也很少实际执行以检查它们是否产生了文章中宣传的结果。《科学》是一本同行评议的杂志,以计算研究为目标,鼓励明确复制已发表的研究,促进新的和开源的实现,以确保原始研究可以从其描述中复制。为了实现这一目标,整个出版链与其他传统科学期刊截然不同。ReScience位于GitHub上,其中每个计算研究的新实现都可以与评论,解释和软件测试一起使用。
Computer science offers a large set of tools for prototyping, writing, running, testing, validating, sharing and reproducing results; however, computational science lags behind. In the best case, authors may provide their source code as a compressed archive and they may feel confident their research is reproducible. But this is not exactly true. James Buckheit and David Donoho proposed more than two decades ago that an article about computational results is advertising, not scholarship. The actual scholarship is the full software environment, code, and data that produced the result. This implies new workflows, in particular in peer-reviews. Existing journals have been slow to adapt: source codes are rarely requested and are hardly ever actually executed to check that they produce the results advertised in the article. ReScience is a peer-reviewed journal that targets computational research and encourages the explicit replication of already published research, promoting new and open-source implementations in order to ensure that the original research can be replicated from its description. To achieve this goal, the whole publishing chain is radically different from other traditional scientific journals. ReScience resides on GitHub where each new implementation of a computational study is made available together with comments, explanations, and software tests.
DOI: 10.1371/journal.pmed.0020124
发表时间: 2005-08-01
期刊: PLOS MEDICINE
影响因子: 15.8
作者:
Ioannidis, JPA
通讯作者: Ioannidis, JPA
DOI: 10.1371/journal.pcbi.1003285
发表时间: 2013-10
影响因子: 4.3
作者:
Sandve GK;Nekrutenko A;Taylor J;Hovig E
通讯作者: Hovig E
DOI: 10.1111/insp.12104
发表时间: 2016-11-01
影响因子: 2.4
作者:
Janz, Nicole
通讯作者: Janz, Nicole
DOI: 10.1145/2812803
发表时间: 2016-03-01
影响因子: 22.7
作者:
Collberg, Christian;Proebsting, Todd A.
通讯作者: Proebsting, Todd A.
DOI: 10.1109/mcse.2009.15
发表时间: 2009-01-01
影响因子: 2.1
作者:
Donoho, David L.;Maleki, Arian;Stodden, Victoria
通讯作者: Stodden, Victoria