Stool microbiome dataset of the critically endangered Puerto Rican parrot (Amazona vittata).
Stool microbiome dataset of the critically endangered Puerto Rican parrot (Amazona vittata).
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DOI：
10.1016/j.dib.2021.107175
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发表时间：
2021-08
期刊：
影响因子：
1.2
通讯作者：
Rios-Velazquez C
中科院分区：
文献类型：
--
作者：
Rodriguez-Reyes MG;Rios-Velazquez C
波多黎各鹦鹉(Amazona Vittata)是波多黎各特有的鹦鹉，是美国唯一的土生土长的鹦鹉，被列为极度濒危物种。波多黎各有两个圈养种群，分别位于El Yunque国家热带雨林的Iguaca Aviary和Río Abajo森林的JoséL.Vivaldi Aviary。为了解黄曲霉粪便微生物群落的特征，采集了21份圈养鸟类粪便样品，提取DNA并用Illumina MiSeq进行了测序。通过去除宿主序列(油桐基因组)和低质量读取来处理序列。使用MG-RAST生成分类和功能简档。结构域最丰富的是细菌(96%)，其次是病毒(3%)和真核生物(0.6%)。在微生物组的功能中，最丰富的是碳水化合物(14%)，其次是基于集群的子系统(12%)，蛋白质代谢(8%)，氨基酸及其衍生物(7%)。本数据集使用元基因组学方法描述了黄曲霉的粪便微生物群。这些数据可以用来制定维塔塔和其他濒危鸟类的整体保护战略，以及寻找具有潜在生物医学和生物技术应用的生物前景。
The Puerto Rican parrot (Amazona vittata), endemic to Puerto Rico, is the only native parrot in the United States and is classified as a critically endangered species. There are two captive populations of A. vittata in Puerto Rico located in the Iguaca Aviary in El Yunque National Rainforest and the José L. Vivaldi Aviary in the Río Abajo Forest. To characterize the microbial communities of A. vittata’s stool, 21 stool samples from captive birds were collected, DNA extracted and sequenced using Illumina MiSeq. Sequences were processed by removing host sequences (A. vittata genome) and low-quality reads. Taxonomic and functional profiles were generated using MG-RAST. The most abundant domain was Bacteria (96%), followed by Virus (3%), and Eukaryota (0.6%). Among the functions in the microbiome, the most abundant was related to carbohydrates (14%), followed by clustering-based subsystems (12%), protein metabolism (8%), and amino acids and derivatives (7%). This dataset describes the stool microbiome of A. vittata using a metagenomics approach. Data can be used to develop holistic conservation strategies for A. vittata and other endangered birds, as well as to search for bioprospects with potential biomedical and biotechnological applications.
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影响因子：
48
作者：
Langmead, Ben;Salzberg, Steven L.
通讯作者：
Salzberg, Steven L.
影响因子：
2.8
作者：
Stirling C;Andrews S;Croft T;Vickers J;Turner P;Robinson A
通讯作者：
Robinson A
影响因子：
3
作者：
Meyer, F.;Paarmann, D.;Edwards, R. A.
通讯作者：
Edwards, R. A.
影响因子：
9.2
作者：
Oleksyk TK;Pombert JF;Siu D;Mazo-Vargas A;Ramos B;Guiblet W;Afanador Y;Ruiz-Rodriguez CT;Nickerson ML;Logue DM;Dean M;Figueroa L;Valentin R;Martinez-Cruzado JC
通讯作者：
Martinez-Cruzado JC