CORUM: the comprehensive resource of mammalian protein complexes.

CORUM: the comprehensive resource of mammalian protein complexes.
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DOI:
10.1093/nar/gkm936
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发表时间:
2008-01
影响因子:
14.9
通讯作者:
Mewes, H. Werner
Mewes, H. Werner
中科院分区:
生物学2区
文献类型:
--
作者:
Ruepp, Andreas;Brauner, Barbara;Dunger-Kaltenbach, Irmtraud;Frishman, Goar;Montrone, Corinna;Stransky, Michael;Waegele, Brigitte;Schmidt, Thorsten;Doudieu, Octave Noubibou;Mpflen, Volker Stu;Mewes, H. Werner

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蛋白质复合物是整合多种基因产物以执行细胞功能的关键分子实体。 CORUM (http://mips.gsf.de/genre/proj/corum/index.html) 数据库是经过实验验证的哺乳动物蛋白质复合物的集合。信息是通过专家注释者对科学文献的批判性阅读而手动得出的。有关蛋白质复合物的信息包括蛋白质复合物名称、亚基、参考文献以及复合物的功能。对于功能注释,我们使用 FunCat 目录,该目录能够将蛋白质复合物空间组织成具有生物学意义的子集。该数据库包含超过 1750 个蛋白质复合物,由 2400 个不同基因构建而成,占人类蛋白质编码基因的 12%。基于网络的系统可用于查询、查看和下载数据。 CORUM 提供全面的蛋白质复合物数据集,用于系统生物学的发现、蛋白质网络和蛋白质复合物相关疾病的分析。与酵母蛋白质复合物的 MIPS 参考数据集相比,CORUM 旨在作为哺乳动物蛋白质复合物的参考。
Protein complexes are key molecular entities that integrate multiple gene products to perform cellular functions. The CORUM (http://mips.gsf.de/genre/proj/corum/index.html) database is a collection of experimentally verified mammalian protein complexes. Information is manually derived by critical reading of the scientific literature from expert annotators. Information about protein complexes includes protein complex names, subunits, literature references as well as the function of the complexes. For functional annotation, we use the FunCat catalogue that enables to organize the protein complex space into biologically meaningful subsets. The database contains more than 1750 protein complexes that are built from 2400 different genes, thus representing 12% of the protein-coding genes in human. A web-based system is available to query, view and download the data. CORUM provides a comprehensive dataset of protein complexes for discoveries in systems biology, analyses of protein networks and protein complex-associated diseases. Comparable to the MIPS reference dataset of protein complexes from yeast, CORUM intends to serve as a reference for mammalian protein complexes.
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