ChIP-Seq: technical considerations for obtaining high-quality data.

ChIP-Seq: technical considerations for obtaining high-quality data.
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DOI:
10.1038/ni.2117
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发表时间:
2011-09-20
期刊:
影响因子:
30.5
通讯作者:
Zhao, Keji
Zhao, Keji
中科院分区:
医学1区
文献类型:
--
作者:
Kidder, Benjamin L.;Hu, Gangqing;Zhao, Keji

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染色质免疫沉淀结合测序分析(ChIP - Seq)是一种强大的方法,可用于研究任何具有已知序列的基因组中染色质结合蛋白和组蛋白修饰在全基因组的分布情况。将该技术应用于各种发育和分化系统,为顺式调控元件、转录因子功能以及参与基因转录控制的表观遗传过程提供了全局视角。在此,我们描述了ChIP - Seq分析的几个技术方面,以减少偏差和背景噪音,并持续产生高质量数据。
Chromatin immunoprecipitation followed by sequencing analysis (ChIP-Seq) is a powerful method to investigate genome-wide distributions of chromatin-binding proteins and histone modifications in any genome with a known sequence. Application of this technique to a variety of developmental and differentiation systems has provided global views of cis regulatory elements, transcription factor function, and epigenetic processes involved in the control of gene transcription. Here, we describe several technical aspects of the ChIP-Seq assay to reduce bias and background noise, and to consistently generate high quality data.
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