A consensus protocol for functional connectivity analysis in the rat brain.
A consensus protocol for functional connectivity analysis in the rat brain.
复制标题
DOI：
10.1038/s41593-023-01286-8
复制
发表时间：
2023-04
影响因子：
25
通讯作者：
Hess, Andreas
中科院分区：
文献类型：
--
作者：
Grandjean, Joanes;Desrosiers-Gregoire, Gabriel;Anckaerts, Cynthia;Angeles-Valdez, Diego;Ayad, Fadi;Barriere, David A.;Blockx, Ines;Bortel, Aleksandra;Broadwater, Margaret;Cardoso, Beatriz M.;Celestine, Marina;Chavez-Negrete, Jorge E.;Choi, Sangcheon;Christiaen, Emma;Clavijo, Perrin;Colon-Perez, Luis;Cramer, Samuel;Daniele, Tolomeo;Dempsey, Elaine;Diao, Yujian;Doelemeyer, Arno;Dopfel, David;Dvorakova, Lenka;Falfan-Melgoza, Claudia;Fernandes, Francisca F.;Fowler, Caitlin F.;Fuentes-Ibanez, Antonio;Garin, Clement;Gelderman, Eveline;Golden, Carla E. M.;Guo, Chao C. G.;Henckens, Marloes J. A. G.;Hennessy, Lauren A.;Herman, Peter;Hofwijks, Nita;Horien, Corey;Ionescu, Tudor M.;Jones, Jolyon;Kaesser, Johannes;Kim, Eugene;Lambers, Henriette;Lazari, Alberto;Lee, Sung-Ho;Lillywhite, Amanda;Liu, Yikang;Liu, Yanyan Y.;Lopez-Castro, Alejandra;Lopez-Gil, Xavier;Ma, Zilu;MacNicol, Eilidh;Madularu, Dan;Mandino, Francesca;Marciano, Sabina;McAuslan, Matthew J.;McCunn, Patrick;McIntosh, Alison;Meng, Xianzong;Meyer-Baese, Lisa;Missault, Stephan;Moro, Federico;Naessens, Daphne M. P.;Nava-Gomez, Laura J.;Nonaka, Hiroi;Ortiz, Juan J.;Paasonen, Jaakko;Peeters, Lore M.;Pereira, Mickael;Perez, Pablo D.;Pompilus, Marjory;Prior, Malcolm;Rakhmatullin, Rustam;Reimann, Henning M.;Reinwald, Jonathan;Del Rio, Rodrigo Triana;Rivera-Olvera, Alejandro;Ruiz-Perez, Daniel;Russo, Gabriele;Rutten, Tobias J.;Ryoke, Rie;Sack, Markus;Salvan, Piergiorgio;Sanganahalli, Basavaraju G.;Schroeter, Aileen;Seewoo, Bhedita J.;Selingue, Erwan;Seuwen, Aline;Shi, Bowen;Sirmpilatze, Nikoloz;Smith, Joanna A.;Smith, Corrie;Sobczak, Filip;Stenroos, Petteri J.;Straathof, Milou;Strobelt, Sandra;Sumiyoshi, Akira;Takahashi, Kengo;Torres-Garcia, Maria E.;Tudela, Raul;van den Berg, Monica;van der Marel, Kajo;van Hout, Aran T. B.;Vertullo, Roberta;Vidal, Benjamin;Vrooman, Roel M.;Wang, Victora X.;Wank, Isabel;Watson, David J. G.;Yin, Ting;Zhang, Yongzhi;Zurbruegg, Stefan;Achard, Sophie;Alcauter, Sarael;Auer, Dorothee P.;Barbier, Emmanuel L.;Baudewig, Juergen;Beckmann, Christian F.;Beckmann, Nicolau;Becq, Guillaume J. P. C.;Blezer, Erwin L. A.;Bolbos, Radu;Boretius, Susann;Bouvard, Sandrine;Budinger, Eike;Buxbaum, Joseph D.;Cash, Diana;Chapman, Victoria;Chuang, Kai-Hsiang;Ciobanu, Luisa;Coolen, Bram F.;Dalley, Jeffrey W.;Dhenain, Marc;Dijkhuizen, Rick M.;Esteban, Oscar;Faber, Cornelius;Febo, Marcelo;Feindel, Kirk W.;Forloni, Gianluigi;Fouquet, Jeremie;Garza-Villarreal, Eduardo A.;Gass, Natalia;Glennon, Jeffrey C.;Gozzi, Alessandro;Grohn, Olli;Harkin, Andrew;Heerschap, Arend;Helluy, Xavier;Herfert, Kristina;Heuser, Arnd;Homberg, Judith R.;Houwing, Danielle J.;Hyder, Fahmeed;Ielacqua, Giovanna Diletta;Jelescu, Ileana O.;Johansen-Berg, Heidi;Kaneko, Gen;Kawashima, Ryuta;Keilholz, Shella D.;Keliris, Georgios A.;Kelly, Clare;Kerskens, Christian;Khokhar, Jibran Y.;Kind, Peter C.;Langlois, Jean-Baptiste;Lerch, Jason P.;Lopez-Hidalgo, Monica A.;Manahan-Vaughan, Denise;Marchand, Fabien;Mars, Rogier B.;Marsella, Gerardo;Micotti, Edoardo;Munoz-Moreno, Emma;Near, Jamie;Niendorf, Thoralf;Otte, Willem M.;Pais-Roldan, Patricia;Pan, Wen-Ju;Prado-Alcala, Roberto A.;Quirarte, Gina L.;Rodger, Jennifer;Rosenow, Tim;Sampaio-Baptista, Cassandra;Sartorius, Alexander;Sawiak, Stephen J.;Scheenen, Tom W. J.;Shemesh, Noam;Shih, Yen-Yu Ian;Shmuel, Amir;Soria, Guadalupe;Stoop, Ron;Thompson, Garth J.;Till, Sally M.;Todd, Nick;van der Linden, Annemie;van der Toorn, Annette;van Tilborg, Geralda A. F.;Vanhove, Christian;Veltien, Andor;Verhoye, Marleen;Wachsmuth, Lydia;Weber-Fahr, Wolfgang;Wenk, Patricia;Yu, Xin;Zerbi, Valerio;Zhang, Nanyin;Zhang, Baogui B.;Zimmer, Luc;Devenyi, Gabriel A.;Chakravarty, M. Mallar;Hess, Andreas
动物模型中的无任务功能连接提供了一个实验框架，可以在受控条件下检查连接现象，并允许与侵入性或终端程序下收集的数据模式进行比较。目前，动物采集是通过不同的协议和分析进行的，这阻碍了结果的比较和整合。在这里，我们介绍 StandardRat，这是一种经过 20 个中心测试的共识大鼠功能磁共振成像采集协议。为了开发具有优化采集和处理参数的协议，我们最初汇总了从 46 个中心的大鼠采集的 65 个功能成像数据集。我们开发了一个可重复的管道，用于分析通过不同协议获取的大鼠数据，并确定与跨中心功能连接的稳健检测相关的实验和处理参数。我们表明，与之前的采集相比，标准化协议增强了生物学上合理的功能连接模式。这里描述的协议和处理流程与神经影像学界公开共享，以促进互操作性和合作，以应对神经科学中最重要的挑战。
Task-free functional connectivity in animal models provides an experimental framework to examine connectivity phenomena under controlled conditions and allows for comparisons with data modalities collected under invasive or terminal procedures. Currently, animal acquisitions are performed with varying protocols and analyses that hamper result comparison and integration. Here we introduce StandardRat, a consensus rat functional magnetic resonance imaging acquisition protocol tested across 20 centers. To develop this protocol with optimized acquisition and processing parameters, we initially aggregated 65 functional imaging datasets acquired from rats across 46 centers. We developed a reproducible pipeline for analyzing rat data acquired with diverse protocols and determined experimental and processing parameters associated with the robust detection of functional connectivity across centers. We show that the standardized protocol enhances biologically plausible functional connectivity patterns relative to previous acquisitions. The protocol and processing pipeline described here is openly shared with the neuroimaging community to promote interoperability and cooperation toward tackling the most important challenges in neuroscience.
登录
查看更多内容
DOI：
10.1073/pnas.0504136102
发表时间：
2005-07-05
影响因子：
11.1
作者：
Fox, MD;Snyder, AZ;Raichle, ME
通讯作者：
Raichle, ME
影响因子：
3.5
作者：
Abraham A;Pedregosa F;Eickenberg M;Gervais P;Mueller A;Kossaifi J;Gramfort A;Thirion B;Varoquaux G
通讯作者：
Varoquaux G
影响因子：
5.7
作者：
Lee SH;Broadwater MA;Ban W;Wang TW;Kim HJ;Dumas JS;Vetreno RP;Herman MA;Morrow AL;Besheer J;Kash TL;Boettiger CA;Robinson DL;Crews FT;Shih YI
通讯作者：
Shih YI
影响因子：
5.7
作者：
Pruim, Raimon H. R.;Mennes, Maarten;Beckmann, Christian F.
通讯作者：
Beckmann, Christian F.
影响因子：
48
作者：
Esteban, Oscar;Markiewicz, Christopher J.;Gorgolewski, Krzysztof J.
通讯作者：
Gorgolewski, Krzysztof J.