The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics.
The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics.
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DOI：
10.1093/gbe/evab176
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发表时间：
2022-01-04
影响因子：
3.3
通讯作者：
Moritz C
中科院分区：
文献类型：
--
作者：
Edwards SV;Robin VV;Ferrand N;Moritz C
比较群体基因组学是一个新兴的领域，利用物种之间的基因组比较来推断调节遗传变异的力量。相比之下，比较系统地理学关注的是地理上共分布的物种的共同谱系历史，从有机体的角度来看是决定性的。比较系统地理学大约有35年的历史，从某些指标来看，它正在显示出增长放缓的迹象。在这里，我们对比了比较种群基因组学和比较系统地理学的目标和方法，并认为比较系统地理学为进化历史提供了一个重要的视角，它成功地将基因组学与景观进化结合起来，以补充比较种群基因组学的超地理视角。我们主要关注陆生脊椎动物，回顾了比较系统地理学的历史，它的里程碑和正在进行的概念创新，它日益增长的全球焦点，以及它作为景观基因组学和物种形成过程之间的桥梁的地位。我们还认为，作为一门具有强烈“地方感”的科学，比较系统地理学以地理和自然历史为重点，提供了丰富的“基于地方”的教育机会，以及与当地社区和土著人民合作的机会。虽然比较系统地理学的许多目标还不需要全基因组测序，但我们得出结论，它仍然在地理和地球历史基础上解释遗传变异方面发挥着重要作用。
Comparative population genomics is an ascendant field using genomic comparisons between species to draw inferences about forces regulating genetic variation. Comparative phylogeography, by contrast, focuses on the shared lineage histories of species codistributed geographically and is decidedly organismal in perspective. Comparative phylogeography is approximately 35 years old, and, by some metrics, is showing signs of reduced growth. Here, we contrast the goals and methods of comparative population genomics and comparative phylogeography and argue that comparative phylogeography offers an important perspective on evolutionary history that succeeds in integrating genomics with landscape evolution in ways that complement the suprageographic perspective of comparative population genomics. Focusing primarily on terrestrial vertebrates, we review the history of comparative phylogeography, its milestones and ongoing conceptual innovations, its increasingly global focus, and its status as a bridge between landscape genomics and the process of speciation. We also argue that, as a science with a strong “sense of place,” comparative phylogeography offers abundant “place-based” educational opportunities with its focus on geography and natural history, as well as opportunities for collaboration with local communities and indigenous peoples. Although comparative phylogeography does not yet require whole-genome sequencing for many of its goals, we conclude that it nonetheless plays an important role in grounding our interpretation of genetic variation in the fundamentals of geography and Earth history.
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DOI：
10.1098/rspb.2014.1369
发表时间：
2014-11-07
影响因子：
4.7
作者：
Alcala, Nicolas;Vuilleumier, Severine
通讯作者：
Vuilleumier, Severine
影响因子：
1.9
作者：
Besnard, Guillaume;Bertrand, Joris A. M.;Thebaud, Christophe
通讯作者：
Thebaud, Christophe
影响因子：
56.9
作者：
Bossuyt, F;Meegaskumbura, M;Milinkovitch, MC
通讯作者：
Milinkovitch, MC
影响因子：
64.8
作者：
CANN, RL;STONEKING, M;WILSON, AC
通讯作者：
WILSON, AC
影响因子：
4.9
作者：
Afonso Silva, Ana C.;Bragg, Jason G.;Moritz, Craig
通讯作者：
Moritz, Craig