Collaborative Research: Analysis of Cold TubulinSequences and Their Implication for Cold-Adaptation of Microtubules

合作研究：冷微管蛋白序列分析及其对微管冷适应的意义

• 批准号: 0324378
• 负责人: Michael Cummings
• 金额: $ 19.99万
• 依托单位: Marine Biological Laboratory
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2003
• 资助国家: 美国
• 起止时间: 2003-09-01 至 2004-02-29
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=0324378&HistoricalAwards=false
• 关键词: Collaborative; Research; Analysis; Cold; TubulinSequences

ABSTRACTGast OPP-0324771CummingsOPP-0324378This is a collaborative proposal by Principal Investigators at the Marine Biological Laboratory and Woods Hole Oceanographic Institution. Despite the prevalence of extremely cold environments on our earth, we understand very little about how organisms have adapted to live in them compared to what we know about how temperate organisms function. An area of interest to the Principal Investigators is the cold-adaptation of microtubules in protists. Microtubules are essential eukaryotic cellular components, and in temperate organisms, are unstable at low temperatures. This instability would be in conflict with life at low temperatures, but considering the relatively high level of diversity and abundance or protists in extremely cold environments, the organisms have obviously adapted. The results of several studies have led to the current understanding that the stability of cold-adapted microtubules is a property intrinsic to the tubulin subunits themselves. Yet overall, only a relatively small number of cold-adapted tubulin sequences have been examined, and because there are very few studies that compare cold-adapted sequences with ones from closely related mesophilic species, it has been difficult to determine whether there are conserved (common) types of changes or positions that correspond to cold-adaptation. The Principal Investigators will recover both a and b tubulin sequences from closely related psychrophilic (from the Arctic and the Antarctic) and mesophilic protist species. Using novel statistical methods, they will analyze tubulin sequences to identify shared sequence changes that potentially represent modifications for cold-stability of microtubules. This study will not only determine whether there are specific sequence hallmarks of cold-adaptation in tubulin sequences, but it will also provide information on modifications that generally enhance interactions between protein subunits in psychrophiles. This program will also begin an assessment of whether the protistan communities in the Arctic region are genetically and physiologically similar to those of the Antarctic. The question of endemic versus cosmopolitan microbial species distribution is a significant one for polar regions due to the important ecological impact these organisms have in extreme cold environments. They are essential components of the microbial food webs and are often the dominant primary producers. The molecular sequence data that the Principal Investigators will collect in this project (both ribosomal and tubulin) will be analyzed to compare the genetic relatedness of putatively similar protistan species/isolates from the two polar regions. There have been reports of similar protist species being observed and collected in both the Arctic and Antarctic, but only a few genetic comparisons have been accomplished and it remains a question as to how closely many of these organisms are actually related. Broader Impacts: Among the broader impacts of this project include the participation of the Principal Investigators in several courses and programs at WHOI and MBL associated with different levels of education, ranging from high school through college. Students involved in these courses and research programs, including those recruited from under-represented groups, will be exposed either directly (through participation in data analysis) or indirectly (through general information outreach) to this research. The dataset that they are generating, and the unique organisms that they are working with, will help to broaden the perspective that these students have regarding evolution, distribution and function of psychrophilic protists.

Gast OPP-0324771 CummingsOPP-0324378这是海洋生物实验室和伍兹霍尔海洋研究所的首席研究人员共同提出的建议。尽管我们的地球上普遍存在极端寒冷的环境，但与我们所知的温带生物如何运作相比，我们对生物如何适应这些环境的了解很少。首席研究人员感兴趣的一个领域是原生生物中微管的冷适应。微管是真核生物必不可少的细胞成分，在温带生物中，在低温下是不稳定的。这种不稳定性将与低温下的生命相冲突，但考虑到极端寒冷环境中相对较高的多样性和丰度或原生生物，生物显然已经适应了。几项研究的结果导致了目前的理解，即冷适应微管的稳定性是微管蛋白亚基本身固有的特性。然而，总的来说，只研究了相对较少的冷适应微管蛋白序列，而且由于很少有研究将冷适应序列与来自密切相关的中温物种的序列进行比较，因此很难确定是否存在与冷适应相对应的保守(常见)类型的变化或位置。首席调查员将从亲缘关系密切的嗜冷性(北极和南极)和中温性原生生物物种中恢复a和b微管蛋白序列。使用新的统计方法，他们将分析微管蛋白序列，以确定共享的序列变化，这些变化可能代表微管的冷稳定性修饰。这项研究不仅将确定在微管蛋白序列中是否存在冷适应的特定序列特征，而且还将提供关于通常增强嗜冷菌蛋白质亚单位之间相互作用的修饰的信息。该计划还将开始评估北极地区的原生生物群落是否在遗传和生理上与南极相似。由于极地微生物在极端寒冷环境中具有重要的生态影响，地方性与世界性微生物物种分布的问题对极地地区来说是一个重要的问题。它们是微生物食物网的重要组成部分，往往是占主导地位的初级生产者。首席研究人员将在该项目中收集的分子序列数据(核糖体和微管蛋白)将被分析，以比较来自两个极地地区假定相似的原生生物物种/分离株的遗传亲缘关系。有报道称，在北极和南极都观察到和收集到了类似的原生生物物种，但只完成了几次遗传比较，其中有多少生物实际上关系密切仍然是一个问题。更广泛的影响：在这个项目的更广泛的影响中，包括首席调查人员参加了WHOI和MBL的几个课程和方案，这些课程和方案与从高中到大学的不同教育水平有关。参与这些课程和研究项目的学生，包括那些从代表性不足的群体中招募的学生，将直接(通过参与数据分析)或间接(通过一般信息拓展)接触到这项研究。他们正在生成的数据集，以及他们正在研究的独特有机体，将有助于拓宽这些学生对嗜冷原生生物的进化、分布和功能的看法。