CAREER:New Tools for High-Throughput Screening of Protein Libraries: Engineering Metalloproteins Displayed on Bacillus Subtilis Spores

职业：蛋白质库高通量筛选的新工具：在枯草芽孢杆菌孢子上展示的工程金属蛋白

• 批准号: 0746078
• 负责人: Edgardo Farinas
• 金额: $ 61.12万
• 依托单位: New Jersey Institute of Technology
• 依托单位国家: 美国
• 项目类别: Continuing Grant
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-04-15 至 2014-06-30
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=0746078&HistoricalAwards=false
• 关键词: CAREER; New; Tools; Throughput; Screening

Key features of enzymes are substrate recognition and catalytic activity, and understanding these attributes would have a broad impact on society. Directed evolution methods have emerged as a key protein engineering tool for understanding structure/function relationships and improving protein properties. The goal is to demonstrate that Bacillus subtilis spores are useful for high-throughput screening. Protein display on the surface of B. subtilis offers advantages over more commonly utilized microbe cell-surface display systems, which include gram negative bacteria, phage, and yeast. For instance, protein folding problems associated with the expressed recombinant polypeptide crossing membranes are avoided. Hence, a different region of protein space can be explored that previously was not accessible. In addition, spores tolerate many physical/chemical extremes; therefore, the displayed proteins are "preimmobilized" on the inherently inert spore surface. Immobilized proteins have several advantages when used in industrial processes. The protein stability is increased and separations are simplified. Finally, immobilized proteins can be used in a wide array of simple device applications and configurations. Structure/function relationships will be elucidated for metalloproteins. Initially, spore display will be demonstrated using the copper containing enzyme CotA, which is present on the B. subtilis spore coat. It will be evolved for increased redox potential and substrate selectivity. The mutants will provide a green alternative for paper bleaching and bioremediation of polycyclic aromatic hydrocarbons. Finally, the CotA system can adapted for heterologous protein display on B. subtilis spores that will be valuable for screening protein libraries.Broader ImpactThe research trains undergraduate and graduate students in the multidisciplinary field of molecular evolution. The Department of Chemistry and Environmental Science at the New Jersey Institute of Technology is creating a new Biochemistry program at the undergraduate and graduate level and it is being built around the principal investigator and recent new hires. An infrastructure is being created providing expertise and resources in biochemistry, molecular biology, and protein engineering. New courses have been developed to fill missing program components and to introduce new topics. Courses include Biochemistry Lab, Molecular Biotechnology, Environmental Biology and Environmental Microbiology. Low-income and first-generation or underrepresented undergraduates have an opportunity to contribute original research through the Ronald E. McNair program at NJIT. The PI has an appointment in the Graduate Faculty in the Department of Biological Science at Rutgers-Newark, which fosters multidisciplinary research between NJIT Chemistry and Rutgers-Newark Biology. The research will also be described to a non-technical audience through the Center of Pre-College Programs at NJIT. High school students have an opportunity to compete in Chemistry Olympics, which is sponsored by NJIT, and economically disadvantaged high school students can also be involved in basic biochemistry research through Project SEED. Also, the planned research enhances international partnerships. The structures of the interesting CotA variants will be solved in collaboration with a crystallographic research group at the Universidade Nova de Lisboa in Portugal.

酶的关键特征是底物识别和催化活性，了解这些属性将对社会产生广泛的影响。定向进化方法已经成为理解结构/功能关系和改善蛋白质性质的关键蛋白质工程工具。目的是证明枯草芽孢杆菌孢子可用于高通量筛选。蛋白质展示在B表面。枯草芽孢杆菌提供了优于更常用的微生物细胞表面展示系统的优点，所述微生物细胞表面展示系统包括革兰氏阴性细菌、噬菌体和酵母。例如，避免了与表达的重组多肽跨膜相关的蛋白质折叠问题。因此，可以探索蛋白质空间的不同区域，这在以前是不可访问的。此外，孢子耐受许多物理/化学极端;因此，展示的蛋白质被“预固定”在固有惰性的孢子表面上。固定化蛋白质在工业过程中使用时具有几个优点。蛋白质的稳定性增加，分离简化。最后，固定化蛋白质可用于广泛的简单装置应用和配置中。金属蛋白的结构/功能关系将被阐明。最初，孢子展示将使用存在于B上的含铜酶科塔进行证明。枯草芽孢衣它将演变为增加氧化还原电位和底物选择性。这些突变体将为纸张漂白和多环芳烃的生物修复提供一种绿色替代方案。最后，科塔系统可用于在B上展示异源蛋白。更广泛的影响这项研究培养了分子进化多学科领域的本科生和研究生。化学与环境科学系在技术的新泽西研究所正在创建一个新的生物化学计划在本科和研究生水平，它是围绕主要研究者和最近的新员工。正在建立一个基础设施，提供生物化学、分子生物学和蛋白质工程方面的专业知识和资源。新的课程已经开发，以填补缺失的程序组件，并引入新的主题。课程包括生物化学实验室，分子生物技术，环境生物学和环境微生物学。低收入和第一代或代表性不足的本科生有机会通过罗纳德E。McNair项目。PI在Rutgers-Newark生物科学系的研究生院有一个职位，该职位促进了NJIT化学和Rutgers-Newark生物学之间的多学科研究。这项研究也将通过NJIT的大学预科课程中心向非技术观众进行描述。高中生有机会参加由NJIT赞助的化学奥林匹克竞赛，经济困难的高中生也可以通过SEED项目参与基础生物化学研究。此外，计划中的研究加强了国际伙伴关系。有趣的科塔变体的结构将与葡萄牙新葡京大学的晶体学研究小组合作解决。