Collaborative Research: ABI Development: Integrated X-Ray Motion Analysis Software and Video Data Management for the Comparative Biomechanics Community
合作研究:ABI 开发:针对比较生物力学界的集成 X 射线运动分析软件和视频数据管理
基本信息
- 批准号:1262156
- 负责人:
- 金额:$ 90.62万
- 依托单位:
- 依托单位国家:美国
- 项目类别:Continuing Grant
- 财政年份:2013
- 资助国家:美国
- 起止时间:2013-07-01 至 2017-06-30
- 项目状态:已结题
- 来源:
- 关键词:
项目摘要
X-ray Reconstruction of Moving Morphology (XROMM) is a new technology for visualizing bones and joints during rapid motion, such as birds in flight, frogs jumping, and humans running. XROMM has already transformed studies of vertebrate animal motion, but the current software available for XROMM analysis is cumbersome and poorly integrated with data pipelines. This project will apply best practices of software engineering to create an open-source XROMM analysis package that is integrated with an online data management system. The software products will improve user experience, speed, robustness, and reproducibility of the XROMM analysis process. The low throughput of current tools is a problem because a fundamental goal of comparative biomechanics is to compare species, and thereby to extract robust relationships between form and function. The new tools developed through this award will significantly increase the throughput of the XROMM process, and also provide integrated analysis and management of complex data sets. This project will substantially enhance the cyberinfrastructure for comparative biomechanics research, and increase US economic competitiveness through technology development and advanced training of the scientific workforce. All software products and documentation will be open source and made freely available, and all source code will be deposited in a public code repository. Undergraduate and graduate students at Brown University, and undergraduates at Providence College (a primarily undergraduate institution), will gain interdisciplinary training in biology, engineering, and computer science. As part of this project, at least 45 students, researchers, and educators will participate in XROMM Short Courses at Brown (15 per year for 3 years). The XROMM Short Courses at Brown are an effective way to teach complex XROMM methods to researchers and educators at a range of career levels and from diverse types of institutions, including schools, colleges, and museums as well as research universities. All products from this project will be made available through www.xromm.org.
运动形态学X射线重建(XROMM)是一种用于快速运动过程中骨骼和关节可视化的新技术,例如鸟类飞行,青蛙跳跃和人类跑步。XROMM已经改变了脊椎动物运动的研究,但目前可用于XROMM分析的软件很麻烦,与数据管道的集成很差。该项目将应用软件工程的最佳做法,创建一个与在线数据管理系统集成的开源XROMM分析包。该软件产品将改善XROMM分析过程的用户体验、速度、鲁棒性和再现性。当前工具的低吞吐量是一个问题,因为比较生物力学的基本目标是比较物种,从而提取形式和功能之间的鲁棒关系。通过该奖项开发的新工具将显著提高XROMM流程的吞吐量,并提供复杂数据集的集成分析和管理。该项目将大大加强比较生物力学研究的网络基础设施,并通过技术开发和科学劳动力的高级培训提高美国的经济竞争力。所有软件产品和文档都将是开源的,并免费提供,所有源代码都将存放在公共代码库中。布朗大学的本科生和研究生以及普罗维登斯学院(主要是本科院校)的本科生将获得生物学、工程学和计算机科学方面的跨学科培训。作为该项目的一部分,至少有45名学生,研究人员和教育工作者将参加布朗的XROMM短期课程(每年15人,为期3年)。布朗大学的XROMM短期课程是向各种职业水平的研究人员和教育工作者教授复杂的XROMM方法的有效途径,这些研究人员和教育工作者来自不同类型的机构,包括学校,学院和博物馆以及研究型大学。该项目的所有产品都将通过www.xromm.org提供。
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
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Elizabeth Brainerd其他文献
Efficient fish not faint-hearted
高效率的鱼不是胆小鬼。
- DOI:
10.1038/38381 - 发表时间:
1997-09-18 - 期刊:
- 影响因子:48.500
- 作者:
Elizabeth Brainerd - 通讯作者:
Elizabeth Brainerd
Lickety split
立刻;飞快地
- DOI:
10.1038/44498 - 发表时间:
1999-10-21 - 期刊:
- 影响因子:48.500
- 作者:
Elizabeth Brainerd - 通讯作者:
Elizabeth Brainerd
Elizabeth Brainerd的其他文献
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{{ truncateString('Elizabeth Brainerd', 18)}}的其他基金
Updating technical components to sustain XMAPortal and ZMAPortal for the comparative biomechanics research community
更新技术组件以维持比较生物力学研究社区的 XMAPortal 和 ZMAPortal
- 批准号:
2323175 - 财政年份:2023
- 资助金额:
$ 90.62万 - 项目类别:
Standard Grant
Broadening participation of underrepresented groups in STEM through the virtual components of the 2021 Annual Meeting of the Society for Integrative and Comparative Biology
通过综合与比较生物学学会 2021 年年会的虚拟部分,扩大代表性不足群体对 STEM 的参与
- 批准号:
2039597 - 财政年份:2020
- 资助金额:
$ 90.62万 - 项目类别:
Standard Grant
MRI: Development of microXROMM for high-resolution X-ray motion imaging of small animals
MRI:开发用于小动物高分辨率 X 射线运动成像的 microXROMM
- 批准号:
2018738 - 财政年份:2020
- 资助金额:
$ 90.62万 - 项目类别:
Standard Grant
Determining the source of muscle power for suction feeding in ray-finned fishes
确定射线鳍鱼吸食的肌肉力量来源
- 批准号:
1655756 - 财政年份:2017
- 资助金额:
$ 90.62万 - 项目类别:
Continuing Grant
ABI Sustaining: Maintenance of the XMA/ZMAPortal video data management systems and XMALab video motion analysis software for the comparative biomechanics community
ABI Sustaining:为比较生物力学界维护 XMA/ZMAPortal 视频数据管理系统和 XMALab 视频运动分析软件
- 批准号:
1661129 - 财政年份:2017
- 资助金额:
$ 90.62万 - 项目类别:
Standard Grant
DISSERTATION RESEARCH: Experimental miniaturization of guppy offspring
论文研究:孔雀鱼后代的实验小型化
- 批准号:
1601377 - 财政年份:2016
- 资助金额:
$ 90.62万 - 项目类别:
Standard Grant
Rib kinematics and intercostal muscle function in amniotes
羊膜动物的肋骨运动学和肋间肌功能
- 批准号:
1120967 - 财政年份:2011
- 资助金额:
$ 90.62万 - 项目类别:
Continuing Grant
Collaborative Research: QSTORM: Switchable Quantum Dots and Adaptive Optics for Super-Resolution Imaging
合作研究:QSTORM:用于超分辨率成像的可切换量子点和自适应光学器件
- 批准号:
1052700 - 财政年份:2010
- 资助金额:
$ 90.62万 - 项目类别:
Standard Grant
RCN: A Research Coordinaton Network for X-ray Motion Analysis
RCN:X 射线运动分析研究协调网络
- 批准号:
0840950 - 财政年份:2009
- 资助金额:
$ 90.62万 - 项目类别:
Continuing Grant
IDBR: Hardware and Software Development for 3D Visualization of Rapid Skeletal Motion in Vertebrate Animals
IDBR:脊椎动物快速骨骼运动 3D 可视化的硬件和软件开发
- 批准号:
0552051 - 财政年份:2006
- 资助金额:
$ 90.62万 - 项目类别:
Continuing Grant
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