EAGER-NEON: Collaborative Research: Formation of a NEON Microbial Metagenomics Data Synthesis Working Group
EAGER-NEON: Collaborative Research: Formation of a NEON Microbial Metagenomics Data Synthesis Working Group
批准号:
1550852
负责人:
Folker Meyer
金额:
$17.35万
依托单位:
依托单位国家:
美国
项目类别:
Standard Grant
财政年份:
2015
资助国家:
美国
项目状态:
已结题
起止时间:
2015-10-01 至 2018-09-30
中文摘要
这一合作项目的目标是增强分析国家生态观测网络(NEON)微生物元基因组数据集的能力。微生物元基因组学,即通过样本中存在的基因对微生物群落的表征,对于充分理解微生物过程是重要的。该项目将加强科学界可用来描述微生物群落特性的比较分析能力,这将使生物和地球科学数据与目前的其他地球系统观测工作更好地结合起来。这些改进的分析工具将有助于以更全面的方式在环境因素、生物地球化学过程和微生物生态系统结构和功能之间建立更好的相互联系。该项目将设立一个综合工作组,该工作组将收集社区意见,以指导网络基础设施和生物信息学工具的开发,并回答有关霓虹灯微生物元基因组数据集的基本问题。这一合作项目将组成和协调一个分析和整合霓虹灯元基因组学数据的综合工作组,利用生物信息学和网络基础设施工具的持续发展,与地球立方体和关键区天文台等同时开展的地球系统观测工作合作,开发元基因组学数据工具。合成工作组将通过以下方式促进科学进步:1)促进组成一个多样化的小组,以通报和利用霓虹灯微生物元基因组数据;2)探索利用现有和新的生物信息学和网络基础设施工具合成霓虹灯元基因组数据的战略;3)通过与现有和开发的多个开放数据档案相结合,合成霓虹灯元基因组数据集。该项目将能够进行今天无法充分综合的比较,这对于评估微生物生态系统的可持续性和复原力以及这些微生物群落在支持关键生态系统服务方面的作用是必要的。该项目将通过有针对性的科学推广活动和科学界的参与,包括将霓虹灯与其他地球系统观测工作相结合,产生霓虹灯数据产品的广泛科学传播、使用和相互比较。
英文摘要
The goal of this collaborative project is to enhance the ability to analyze microbial metagenomics datasets of the National Ecological Observatory Network (NEON). Microbial metagenomics, the characterization of microbial communities by the genes present in the sample, is important for fully understanding microbial processes. This project will enhance the comparative analytical capabilities available to the scientific community for describing properties of microbial communities, which will enable better integration of biological and geoscience data with other current earth-systems observing efforts. These improved analytic tools will facilitate developing better interconnections between environmental factors, biogeochemical processes, and microbial ecosystem structure and function in a more holistic fashion. The project will establish a Synthesis Working Group that will collect community input for guiding cyber-infrastructure and bioinformatics tool development and for answering fundamental questions with the NEON microbial metagenomics data sets. This collaborative project will form and coordinate a Synthesis Working Group for analysis and integration of NEON metagenomics data, leveraging ongoing development of bioinformatics and cyber-infrastructure tools for metagenomic data in partnership with other concurrent earth-systems observing efforts EarthCube and Critical Zone Observatories. The Synthesis Working Group will enhance scientific advancement by 1) facilitating formation of a diverse team to inform and utilize NEON microbial metagenomic data, 2) exploring strategies for synthesis of NEON metagenomic data using existing and new bioinformatics and cyberinfrastructure tools, and 3) synthesizing NEON metagenomic datasets via integration with multiple existing and developing open data archives. This project will enable comparisons that cannot be adequately synthesized today, which is necessary for evaluating the sustainability and resilience of microbial ecosystems, as well as the function of these microbial communities in supporting key ecosystem services. The project will engender broad scientific dissemination, use, and intercomparison of NEON data products through targeted scientific outreach activities and engagement of the scientific community, including integration of NEON with other earth-systems observing efforts.
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专著(0)
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会议论文
Bilateral NSF/BIO-BBSRC: Collaborative Research: ABI Development: A Metagenomic Exchange - enriching metagenomics analysis by synergistic harmonisation of MG-RAST and the EBI Metag
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批准号:1645609
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项目类别:Continuing Grant
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资助金额:$124.34万
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财政年份:2016
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负责人:Folker Meyer
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依托单位:
Second Argonne Soils Workshop, Argonne National Laboratory, Argonne, IL, October 6-8, 2010
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批准号:1059066
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项目类别:Standard Grant
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资助金额:$3.5万
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财政年份:2010
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负责人:Folker Meyer
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依托单位:
海外基金