ABI INNOVATION: PHYLOGENETIC METHODS FOR IMPUTING MISSING PLANT TRAIT VALUES IN GLOBAL DATABASES

ABI 创新：在全球数据库中估算缺失植物性状值的系统发育方法

• 批准号: 1643053
• 负责人: Nathan Swenson
• 金额: $ 14.66万
• 依托单位: University of Maryland, College Park
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-11-16 至 2017-03-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1643053&HistoricalAwards=false
• 关键词: ABI; INNOVATION; PHYLOGENETIC; METHODS; IMPUTING

An award is made to Michigan State University to develop methods to use the known shared evolutionary history of species to estimate the trait values missing in global databases. Ecologists have demonstrated a strong linkage between the diversity of how plants function and the health and stability of our ecosystems. This linkage can therefore be utilized to generate predictive models of how vegetation responds to climate from local to global scales. However such modeling on global scales is fundamentally limited by a lack of detailed maps of the diversity of plant function on continental scales. This limitation is generally the result of large holes in global plant trait databases that will not be adequately filled through additional field campaigns in the near future. Thus a key challenge this project will address by developing derive computational tools is the estimation of missing trait values in global databases. In particular, previous work has shown that closely related species tend to have similar traits due to common descent. This evolutionary non-independence in trait data already collected can be harnessed to make reliable estimations of trait data that cannot be collected in the near future. This project tests the suitability of estimation methods on real and simulated datasets to determine when, where and why the methods are robust. The ultimate goal of this research is to identify and test a series of methods that can rapidly and reliably fill in the gaps of global trait databases to facilitate the mapping of plant function on continental scales. It is expected that such maps will then be utilized to generate more refined models of vegetation structure and dynamics in the future.The project includes training and mentoring of a postdoctoral researcher and graduate student and collaborative research with colleagues in Denmark. The project also includes phylogenetic and functional trait training workshops for graduate students and early career researchers. The research will make several previously unpublished datasets publicly available and will lead to the development and and dissemination of novel R code to impute functional trait values in global databases using large phylogenetic trees. More information on the project can be found at: https://www.msu.edu/~swensonn

密歇根州立大学获得一项奖励，以开发使用已知的物种共同进化历史来估计全球数据库中缺失的性状值的方法。生态学家已经证明了植物功能的多样性与我们生态系统的健康和稳定之间的密切联系。因此，可以利用这种联系来生成从局部到全球尺度的植被如何对气候作出反应的预测模型。然而，这种全球规模的建模是从根本上限制了大陆尺度上的植物功能的多样性的详细地图的缺乏。这一限制通常是全球植物性状数据库中的大漏洞造成的，在不久的将来，通过额外的实地活动将无法充分填补这些漏洞。因此，本项目将通过开发衍生计算工具来解决的一个关键挑战是估计全球数据库中缺失的性状值。特别是，以前的研究表明，由于共同的血统，密切相关的物种往往具有相似的特征。已经收集的性状数据的这种进化非独立性可以被利用来对在不久的将来无法收集的性状数据进行可靠的估计。该项目测试估计方法在真实的和模拟数据集上的适用性，以确定何时、何地以及为什么这些方法是稳健的。本研究的最终目标是确定和测试一系列方法，这些方法可以快速可靠地填补全球性状数据库的空白，以促进大陆尺度上植物功能的映射。预计今后将利用这些地图制作更精确的植被结构和动态模型。该项目包括培训和指导一名博士后研究员和研究生，以及与丹麦的同事进行合作研究。该项目还包括研究生和早期职业研究人员的系统发育和功能性状培训讲习班。该研究将公开几个以前未发表的数据集，并将导致新的R代码的开发和传播，以使用大型系统发育树在全球数据库中估算功能性状值。有关该项目的更多信息，请访问：https://www.msu.edu/~swensonn