CC* Cyber Team: Creating a Community of Regional Data and Workflow Cyberinfrastructure Facilitators

CC* 网络团队：创建区域数据和工作流程网络基础设施促进者社区

• 批准号: 1659425
• 负责人: Shelley Knuth
• 金额: $ 149.78万
• 依托单位: University of Colorado at Boulder
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-04-01 至 2021-03-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1659425&HistoricalAwards=false
• 关键词: CC; Cyber; Team; Creating; Community

A distributed team of data and workflow facilitators ("cyberteam") from the University of Colorado Boulder, the University of Utah, and Colorado State University support experimental and observational science (EOS) research as part of the Rocky Mountain Advanced Computing Consortium (RMACC). Advances in the number/diversity of data sets require enhanced capabilities to access, reuse, process, analyze, understand, curate, share, and preserve data. A critical aspect of these efforts is to provide expert support for efficient and effective workflows involving data generation, data analysis, visualization, and preservation. Typically, these activities have been the responsibilities of individual researchers, and as a result, data can be difficult to reuse by others. Likewise, computational and data generation workflows are often cobbled together, hard-coded, and not readily amenable for sharing.These problems are addressed by the distributed RMACC cyberteam who will provide support for researchers in the region by assisting them with data and workflow reuse and management. The facilitators have complementary skills and expertise, and are fully integrated into campus and regional efforts. Their focus is on data curation and metadata, and data and compute workflows, including protected information. These facilitators, in collaboration with others in the region, provide and develop regional, shared resources to support data management for small research groups and under-resourced communities, including working with regional RMACC partners.

来自科罗拉多大学博尔德分校、犹他州大学和科罗拉多州立大学的分布式数据和工作流促进者团队（“cyberteam”）支持实验和观测科学（EOS）研究，作为落基山高级计算联盟（RMACC）的一部分。数据集的数量/多样性的进步需要增强访问、重用、处理、分析、理解、管理、共享和保存数据的能力。这些工作的一个关键方面是为涉及数据生成、数据分析、可视化和保存的高效工作流提供专家支持。通常情况下，这些活动一直是个人研究人员的责任，因此，数据很难被其他人重用。同样，计算和数据生成的工作流程往往是拼凑在一起，硬编码，并不容易进行共享。这些问题是由分布式RMACC网络团队解决的，他们将通过协助数据和工作流程的重用和管理，为该地区的研究人员提供支持。主持人有互补的技能和专业知识，并充分融入校园和区域的努力。他们的重点是数据策展和元数据，以及数据和计算工作流，包括受保护的信息。这些促进者与该地区的其他人合作，提供和开发区域共享资源，以支持小型研究小组和资源不足社区的数据管理，包括与区域RMACC合作伙伴合作。

项目成果

Improving regional cyberinfrastructure services through collaboration: Cyberteam for the Rocky Mountain Advanced Computing Consortium

通过协作改善区域网络基础设施服务：落基山高级计算联盟网络团队

• DOI: 10.1145/3332186.3332232
• 发表时间: 2019
• 期刊: PEARC '19: Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning
• 作者: Monaghan, Andrew J.;Paschal, Dawn;Siegel, H. J.;Kaiser, Timothy;Johnson, Andrew M.;Yeager, Becky;Milash, Brett;Magle, Tobin;Hauser, Thomas;Cheatham, Thomas E.
• 通讯作者: Cheatham, Thomas E.

An Expansion of the User Support Services for the Research Computing Group at the University of Colorado Boulder

科罗拉多大学博尔德分校研究计算小组的用户支持服务扩展

• DOI: 10.1145/3332186.3332229
• 发表时间: 2020
• 期刊: PEARC '19: Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning
• 作者: Knuth, Shelley L.;Frahm, Joel;Monaghan, Andrew J.;Trahan, Daniel;Sampedro, Zebula;Holt, Aaron;Dunn, Timothy;Hauser, Thomas;Burns, Patrick
• 通讯作者: Burns, Patrick

Retrospective clinical trial experimentally validates glioblastoma genome-wide pattern of DNA copy-number alterations predictor of survival

回顾性临床试验通过实验验证了胶质母细胞瘤全基因组 DNA 拷贝数改变模式的生存预测因子

• DOI: 10.1063/1.5142559
• 发表时间: 2020
• 期刊: APL Bioengineering
• 影响因子: 6
• 作者: Ponnapalli, Sri Priya;Bradley, Matthew W.;Devine, Karen;Bowen, Jay;Coppens, Sara E.;Leraas, Kristen M.;Milash, Brett A.;Li, Fuqiang;Luo, Huijuan;Qiu, Shi
• 通讯作者: Qiu, Shi