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RII Track-2 FEC: Genomic Logic Underlying Adaptive Morphological Divergence

RII Track-2 FEC: Genomic Logic Underlying Adaptive Morphological Divergence
RII Track-2 FEC:自适应形态分歧背后的基因组逻辑
批准号:
1736026
负责人:
Riccardo Papa
金额:
$400.0万
依托单位国家:
美国
项目类别:
Cooperative Agreement
财政年份:
2017
资助国家:
美国
项目状态:
未结题
起止时间:
2017-08-01 至 2025-07-31

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Non-technical descriptionThis Research Infrastructure Improvement Track-2 Focused EPSCoR Collaboration (RII Track-2 FEC) is a joint project between the University of Puerto Rico, Rio Piedras and Mississippi State University that addresses a fundamental question in biology: How do changes in DNA result in changes in phenotype? The study leverages morphological diversity in butterfly populations and cutting-edge DNA sequencing methods to explore how genetic changes impact wing pattern development. The goals are to understand what type of genomic changes and molecular mechanisms underlie biological diversity and prepare a diverse group of skilled researchers, innovators, and educators. Educational activities include modernizing undergraduate biology laboratory courses, student exchanges between PR and MS, genome to phenome workshops and other professional development workshops for early career faculty and K-12 teachers, and research experience opportunities for K-12 teachers and students. The team members will develop a bilingual (English and Spanish) curriculum for use in secondary schools focused on genomics and gene expression and regulation and explain concepts of natural diversity, adaptation, and evolution that aligns with Next Generation Science Standards and jurisdictional Department of Education Science Standards.Technical descriptionThis collaborative program between the University of Puerto Rico-Rio Piedras and Mississippi State University aims to characterize the genomic changes and molecular mechanisms responsible for the evolution of morphological diversity. Butterfly wing color patterns are utilized as a model system to build an integrative understanding of genotype-to-phenotype relationships by addressing the following questions: 1) What are the DNA changes associated with wing pattern divergence? 2) What is the gene regulatory network underlying divergent color pattern development? and 3), What do these changes tell us about the nature of morphological diversification? Through DNA sequencing, chromatin profiling, and genome editing this study offers an in-depth cause-effect analysis of the genetic changes that drive morphological divergence in neotropical, Heliconius butterflies. This study bridges the gap between population genetics, epigenetics, gene regulation, and pattern development to disentangle the genomic logic of developmental evolution and better understand the origin of morphological diversity. Three early career faculty participating in this project will be mentored by senior faculty and participate in research and teaching workshops. The project team members will work collaboratively to develop educational materials and training activities that span pre-college, undergraduate, and post-graduate levels of science education in Puerto Rico and Mississippi.
期刊论文(26)
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会议论文
A butterfly pan-genome reveals a large amount of structural variation underlies the evolution of chromatin accessibility
蝴蝶泛基因组揭示了染色质可及性进化背后的大量结构变异
DOI: 10.1101/2022.04.14.488334
发表时间: 2022
期刊: bioRxiv
影响因子: --
作者: [Ruggieri, Angelo A., Livraghi, Luca, Lewis, James J., Cicconardi, Francesco, Hebberecht, Laura, Montgomery, Stephen H., Ghezzi, Alfredo, Rodriguez-Martinez, José Arcadio, Jiggins, Chris D., McMillan, W. Owen]
通讯作者: McMillan, W. Owen
DOI: 10.1126/science.ade0004
发表时间: 2023-03-10
期刊: SCIENCE
影响因子: 56.9
作者: [Belleghem, Steven M. Van, Ruggieri, Angelo A., Papa, Riccardo]
通讯作者: Papa, Riccardo
DOI: 10.1093/gbe/evz254
发表时间: 2019-11
期刊: Genome Biology and Evolution
影响因子: 3.3
作者: [Luis Rodriguez-Caro;J. Fenner;Caleb Benson;Steven M. Van Belleghem;B. Counterman]
通讯作者: Luis Rodriguez-Caro;J. Fenner;Caleb Benson;Steven M. Van Belleghem;B. Counterman
DOI: 10.1073/pnas.1921318117
发表时间: 2020-06
期刊: Proceedings of the National Academy of Sciences of the United States of America
影响因子: 11.1
作者: [Bas van Schooten;Bas van Schooten;Jesyka Meléndez-Rosa;S. M. Belleghem;C. Jiggins;J. D. Tan;W. McMillan;Riccardo Papa;Riccardo Papa]
通讯作者: Bas van Schooten;Bas van Schooten;Jesyka Meléndez-Rosa;S. M. Belleghem;C. Jiggins;J. D. Tan;W. McMillan;Riccardo Papa;Riccardo Papa
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    Collaborative Research: cis-Regulatory Basis of Butterfly Wing Pattern Evolution
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