Workshop: Best Practices for using Next Generation Sequencing (NGS) Datasets to determine Robust Evidence of Positive Selection and Convergent Evolution of Polar Organisms.
Workshop: Best Practices for using Next Generation Sequencing (NGS) Datasets to determine Robust Evidence of Positive Selection and Convergent Evolution of Polar Organisms.
批准号:
1744877
负责人:
Scott Santagata
金额:
$4.93万
依托单位:
依托单位国家:
美国
项目类别:
Standard Grant
财政年份:
2017
资助国家:
美国
项目状态:
已结题
起止时间:
2017-08-15 至 2021-11-30
中文摘要
这次研讨会的目的是聚集一系列研究人员,利用来自下一代生物DNA(基因组)和RNA(转录)测序的数据集,推进和协调确定极地生物遗传适应的跨学科方法。特别是,这次研讨会将把海洋无脊椎动物作为一个广泛的分类类别加以重点介绍,并着重于以下努力。1)建立合作研究活动,利用基因组和转录组数据集从不同的极地生物中检测正选择下的基因。2)评价在不同海洋生物中确定正向选择基因的现有分析方法;3)探索当前和新的方法,以检测在类似环境条件下通过聚合进化获得的基因修改;以及4)审查以实验室为基础的协议,以证明被南极环境确定为正向选择的候选基因的潜在功能。研讨会还将集中讨论并向更广泛的科学界提出建议,讨论可冻结或以其他方式保存样本以供将来进行测序查询的技术。讲习班协调员将被广泛宣传,并招募代表人数不足的团体参加。在讲习班活动之后,将发表一份关于努力成果的最后报告。
英文摘要
This workshop aims to bring together a range of investigators to advance and coordinate cross-disciplinary approaches for determining genetic adaptations in polar organisms using datasets derived from Next Generation Sequencing of organisms DNA (genomes) and RNA (trasncriptomes). In particular, this workshop will focus on marine invertebrates as a broad taxonomic grouping and focus on the following efforts. 1) Establishing collaborative research activities that can test for genes under positive selection from diverse polar organisms using genomic and transcriptomic datasets. 2) evaluating current analytical methods for determining positively selected genes among diverse marine organisms 3) exploring current and novel methodologies for detecting genetic modifications acquired through convergent evolution in response to similar environmental conditions and 4) reviewing lab-based protocols for demonstrating the potential functions of candidate genes identified as being positively selected for by Antarctic environments. The workshops will also focus discussions and recommendations to the broader scientific community regarding techniques amenable to freezing or otherwise preserving samples for future sequencing inquires. The workshop coordinators will be advertised broadly and recruit underrepresented groups to participate. Following workshop activities a final report will be published on the outcomes of the efforts.
期刊论文(4)
专著(0)
科研奖励(0)
会议论文
DOI:
10.1093/molbev/msz151
发表时间:
2019-11-01
期刊:
MOLECULAR BIOLOGY AND EVOLUTION
影响因子:
10.7
作者:
[Kenny, Nathan J., Plese, Bruna, Itskovich, Valeria B.]
通讯作者:
Itskovich, Valeria B.
DOI:
10.3389/fevo.2018.00116
发表时间:
2018-08
期刊:
Frontiers in Ecology and Evolution
影响因子:
3
作者:
[S. Santagata;Veronica Ade;A. Mahon;Phillip A. Wisocki;K. Halanych]
通讯作者:
S. Santagata;Veronica Ade;A. Mahon;Phillip A. Wisocki;K. Halanych
ANT LIA Collaborative Research: Interrogating Molecular and Physiological Adaptations in Antarctic Marine Animals.
-
批准号:1935635
-
项目类别:Standard Grant
-
资助金额:$15.22万
-
财政年份:2020
-
负责人:Scott Santagata
-
依托单位:
国内基金
海外基金
登录
查看更多内容
BEST3经MEKK2/3-LATS1/2-YAP/TAZ信号轴阻断子宫内膜基质
细胞自噬在宫腔粘连中的机制研究
-
批准号:
-
项目类别:省市级项目
-
资助金额:--
-
批准年份:2024
-
负责人:陈醒
-
依托单位:
Clic1 与 Best1 氯离子通道协同调节视神经再生及调
控机制
-
批准号:2024JJ5471
-
项目类别:省市级项目
-
资助金额:--
-
批准年份:2024
-
负责人:王树超
-
依托单位:
Best1通道调控缺血性脑卒中的兴奋-抑制平衡
-
批准号:
-
项目类别:省市级项目
-
资助金额:--
-
批准年份:2021
-
负责人:
-
依托单位:
Best1通道在脑缺血急性损伤和功能修复中的特殊双相作用
-
批准号:82171293
-
项目类别:面上项目
-
资助金额:54万元
-
批准年份:2021
-
负责人:罗春霞
-
依托单位:
BEST4作为Notch2-Hes4轴的关键靶分子通过拮抗STAT3二聚化逆转EMT抑制结直肠癌转移的作用和机制研究
-
批准号:82103539
-
项目类别:青年科学基金项目(C类)
-
资助金额:30.0万元
-
批准年份:2021
-
负责人:王紫静
-
依托单位:
中国医患治疗偏好研究:基于Best-worst标度法的探索
-
批准号:71804122
-
项目类别:青年科学基金项目
-
资助金额:18.0万元
-
批准年份:2018
-
负责人:贺小宁
-
依托单位: