CAREER: Examining the Role of Nascent Multicellular Life Cycles on the Evolution of Organismal Complexity

职业：研究新生多细胞生命周期对生物体复杂性进化的作用

• 批准号: 1845363
• 负责人: William Ratcliff
• 金额: $ 107.54万
• 依托单位: Georgia Tech Research Corporation
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2019
• 资助国家: 美国
• 起止时间: 2019-05-01 至 2025-04-30
• 项目状态: 未结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1845363&HistoricalAwards=false
• 关键词: CAREER; Examining; Role; Nascent; Multicellular

The evolution of multicellular organisms has occurred repeatedly over the history of life and in each case led to new more complex life forms, such as plants and animals. Yet, little is known about how single celled organisms evolve to form multicellular groups, and how these groups subsequently evolve into complex, integrated multicellular individuals. These questions persist because these transitions are deep in the past. This project overcomes this limitation with a novel experimental yeast system and directly examines the evolution of multicellularity in the lab. Using synthetic biology, the team will construct a yeast strain capable of expressing all possible early multicellular life cycles: a single-celled stage, an aggregative multicellular stage, and a clonally-developing multicellular stage. The project examines how yeast expressing these different life cycles evolve, over thousands of generations in the lab, examining two key steps necessary for the evolution of multicellularity: the origins of interdependent cells and cellular differentiation. Using this unique experimental system and the powerful tools of modern cell biology, this project stands to make fundamental insights into the origins of multicellularity. In parallel to the experiments described above, the team will pursue a broad-based educational outreach platform, explaining the wonder and elegance of major evolutionary transitions to children, high school students, undergrad/graduate students, and scientifically-curious adults. This will be accomplished primarily by developing novel high school and college curricula, holding workshops to train teachers how to use this material, and writing books aimed at a general audience.Recent experiments have shown that unicellular organisms readily evolve to form multi-celled clusters, but little is known about how cellular clusters subsequently evolve greater multicellular complexity. The proposed research addresses this subject directly, using the snowflake yeast model system, by asking the following questions: How are cells stripped of their evolutionary autonomy, evolving from organisms into mutually-reliant parts of the new multicellular organism? How does novel cellular differentiation arise? Can specific life cycles (i.e., obligate clonal development) catalyze the evolution of the above traits? Conversely, are these processes undermined by the inclusion of other common life history stages (i.e., an extended single-cell phase or aggregation)? The project will address these questions with yeast strains engineered to express different life cycles, as detailed above, and then allowed to evolve over many generations. The tools of modern cell biology, such as synthetic biology, single cell RNA-seq, and 3D confocal microscopy, will allow the research team to follow the evolutionary dynamics and characterize specific changes in these lineages. Answering the above questions will provide fundamental insight into the evolutionary origins of multicellularity and will provide a theoretical foundation for similar investigations in other major evolutionary transitions. The educational aims for this CAREER award have three major components: i) Develop, disseminate and support snowflake yeast lab kits for use in high school and college courses. The PI will also host monthly summertime teacher training workshops, recruiting teachers from predominantly African American Atlanta public schools, and give talks to audiences of high school teachers. ii) Develop a novel course 'Origin of Complex Life: from Cells to Societies' at Georgia Tech, and help create a three-week snowflake yeast module for a graduate-level biophysics course. iii) Reach a general audience through books. The PI will write two books on major evolutionary transitions, a picture book aimed at children (~5-8 years old) and a book for an adult audience.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

多细胞生物的进化在生命的历史上反复发生，每一次都导致了新的更复杂的生命形式，如植物和动物。然而，关于单细胞生物如何进化成多细胞群体，以及这些群体随后如何进化成复杂的、整合的多细胞个体，人们知之甚少。这些问题之所以存在，是因为这些过渡都是过去的事了。这个项目用一种新的实验性酵母系统克服了这一限制，并直接在实验室中检查了多细胞的进化。利用合成生物学，该团队将构建一种能够表达所有可能的早期多细胞生命周期的酵母菌株：单细胞阶段、聚集多细胞阶段和克隆发育的多细胞阶段。该项目在实验室中研究了表达这些不同生命周期的酵母是如何在数千代人中进化的，并检查了多细胞进化所必需的两个关键步骤：相互依赖的细胞的起源和细胞分化。使用这一独特的实验系统和现代细胞生物学的强大工具，该项目将对多细胞的起源做出基本的见解。在进行上述实验的同时，该团队将建立一个基础广泛的教育推广平台，向儿童、高中生、本科生/研究生和对科学感兴趣的成年人解释重大进化转变的奇妙和优雅。这将主要通过开发新颖的高中和大学课程，举办研讨会培训教师如何使用这种材料，以及写针对普通读者的书籍来实现。最近的实验表明，单细胞生物体很容易进化成多细胞集群，但人们对细胞集群如何随后演变成更大的多细胞复杂性知之甚少。这项拟议的研究使用雪花酵母模型系统直接解决了这个问题，提出了以下问题：细胞如何被剥夺其进化自主性，从生物体进化成新的多细胞生物体中相互依赖的部分？新的细胞分化是如何产生的？特定的生命周期(即专性克隆发育)能催化上述特征的进化吗？相反，这些过程是否被纳入其他共同的生命历史阶段(即延长的单细胞阶段或聚合)所破坏？该项目将通过设计酵母菌株来解决这些问题，这些酵母菌株可以表达不同的生命周期，如上所述，然后允许其在许多世代中进化。现代细胞生物学的工具，如合成生物学、单细胞RNA-SEQ和3D共聚焦显微镜，将使研究团队能够跟踪进化动态并表征这些谱系中的具体变化。回答上述问题将提供对多细胞进化起源的根本洞察，并将为其他重大进化转变的类似研究提供理论基础。这一职业奖项的教育目标有三个主要组成部分：i)开发、传播和支持用于高中和大学课程的雪花酵母实验室试剂盒。PI还将每月举办暑期教师培训研讨会，从以非裔美国人为主的亚特兰大公立学校招聘教师，并向高中教师听众发表演讲。Ii)在佐治亚理工学院开发一门新课程《复杂生命的起源：从细胞到社会》，并帮助创建一个为期三周的雪花酵母模块，用于研究生水平的生物物理课程。Iii)通过书籍接触到普通受众。PI将撰写两本关于重大进化转变的书籍，一本针对儿童(~5-8岁)的图画书和一本面向成人读者的书。这一奖项反映了NSF的法定使命，并通过使用基金会的智力优势和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Selective drivers of simple multicellularity

简单多细胞的选择性驱动因素

• DOI: 10.1016/j.mib.2022.102141
• 发表时间: 2022
• 期刊: Current Opinion in Microbiology
• 影响因子: 5.4
• 作者: Tong, Kai;Bozdag, G Ozan;Ratcliff, William C
• 通讯作者: Ratcliff, William C

Ecological Advantages and Evolutionary Limitations of Aggregative Multicellular Development

集体多细胞发育的生态优势和进化限制

• DOI: 10.1016/j.cub.2020.08.006
• 发表时间: 2020
• 期刊: Current Biology
• 影响因子: 9.2
• 作者: Pentz, Jennifer T.;Márquez-Zacarías, Pedro;Bozdag, G. Ozan;Burnetti, Anthony;Yunker, Peter J.;Libby, Eric;Ratcliff, William C.
• 通讯作者: Ratcliff, William C.

The science of storytelling: the David Attenborough style of scientific presentation

讲故事的科学：大卫·阿滕伯勒的科学呈现风格

• DOI: 10.1016/j.molmed.2023.05.002
• 发表时间: 2023
• 期刊: Trends in Molecular Medicine
• 影响因子: 13.6
• 作者: Ratcliff, William C.

Evolution: Understanding the origins of facultative multicellular life cycles

进化：了解兼性多细胞生命周期的起源

• DOI: 10.1016/j.cub.2023.03.065
• 发表时间: 2023
• 期刊: Current Biology
• 影响因子: 9.2
• 作者: Conlin, Peter L.;Ratcliff, William C.
• 通讯作者: Ratcliff, William C.

Lichens and microbial syntrophies offer models for an interdependent route to multicellularity

• DOI: 10.1017/s0024282921000256
• 发表时间: 2021-07
• 期刊: The Lichenologist
• 作者: E. Libby;W. Ratcliff