Numerische Modellierung von Struktur und Eigenschaften polyphiler Moleküle in Lipidmembranen
Numerische Modellierung von Struktur und Eigenschaften polyphiler Moleküle in Lipidmembranen
批准号:
236583888
负责人:
Professor Dr. Daniel Sebastiani
金额:
$0.0万
依托单位国家:
德国
项目类别:
Research Units
财政年份:
2013
资助国家:
德国
项目状态:
已结题
起止时间:
2012-12-31 至 2015-12-31
中文摘要
几种类型的亲多分子将研究与磷脂双层膜的相互作用。除了亲水部分和疏水部分外,分子中还应含有亲氟部分。这些分子将由线形、X形和t形的多亲体组成,这些多亲体已在其他子项目中合成和研究过。对于线性分子和x形分子,这些分子簇在磷脂膜内和跨膜上的方向将是我们感兴趣的,而t形多亲分子将在二维膜段的框架中进行模拟,在那里它们有望稳定双细胞结构。除了这些双组分体系的形态上层结构外,还将特别关注亲氟基团的功能和定位。分子动力学模拟的目的是为了了解这些系统中控制超分子自组织过程的结构驱动力,同时也为了阐明多亲分子(特别是氟化段)改变膜性质的方式。一方面,这与亲氟部分与极性膜-水界面的相互作用有关,另一方面,鉴于脂质分子的迁移和扩散特性以及膜相对于水分子的渗透性,它针对的是膜作为一个实体的性质。分子动力学模拟的结果将与核磁共振和显微镜项目的实验数据进行比较,以验证模拟的输出,同时也为了在分子水平上解释实验结果。
英文摘要
Several types of polyphile molecules will be studied in interaction with phospholipid bilayer membranes. Besides hydrophilic and hydrophobic parts, the molecules shall contain fluorophilic segments. The molecules will consist of linear, X- and T-shaped polyphiles as synthesized and investigated in the other subprojects. For the linear and X-shaped molecules, the orientation of clusters of these molecules inside and across the phospholipid membranes will be of interest, while the T-shaped polyphiles will be simulated in the framework of twodimensional membrane segments, where they are expected to stabilize the bicellular structure. Besides the morphological superstructure of these two-componentsystems, a particular focus will be put on the function and localization of the fluorophile groups. The aim of the molecular dynamics simulations is to obtain an understanding of the structural driving forces that govern the supramolecular selforganization process in these systems, but also to elucidate the way in which the polyphile molecules (and in particular the fluorinated segments) modify the properties of the membrane as such. One the one hand, this is related to the interaction of the fluorophile parts with the polar membrane-water interface, and on the other hand, it targets the properties of the membrane as an entity, in view of the mobility and diffusion properties of the lipid molecules and the permeability of the membrane with respect to water molecules. The results of the molecular dynamics simulations will be compared with experimental data from NMR and microscopy projects, in order to verify the output of the simulations, but also in order to interpret the experimental findings on a molecular level.
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会议论文
Ab-initio molecular dynamics simulations and calculation of spectroscopic properties in hydrogen bonding liquids in geometric confinements
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批准号:203758181
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项目类别:Research Units
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资助金额:$0.0万
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财政年份:2011
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负责人:Professor Dr. Daniel Sebastiani
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依托单位:
Molecular dynamics and kinetic Monte Carlo simulations of protonation dynamics in fuel cell membrane materials and membrane proteins
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批准号:122839674
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2009
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负责人:Professor Dr. Daniel Sebastiani
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依托单位:
Simulation der Molekulardynamik komplexer Systeme in kondensierten Phasen (Festkörper, Flüssigkeiten, supramolekulare Systeme)
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批准号:122838052
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项目类别:Heisenberg Fellowships
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资助金额:$0.0万
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财政年份:2009
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负责人:Professor Dr. Daniel Sebastiani
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依托单位:
Entwicklung und Implementierung neuer Berechnungsverfahren für elektronische Eigenschaften mit Dichtefunktionaltheorie-Rechnungen in kondensierter Materie
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批准号:5430179
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:2004
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负责人:Professor Dr. Daniel Sebastiani
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依托单位:
Dynamics of small cations in condensed matter systems from combined molecular dynamics and Monte Carlo simulations
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批准号:435886714
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项目类别:Research Grants
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资助金额:$0.0万
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财政年份:--
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负责人:Professor Dr. Daniel Sebastiani
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依托单位:
海外基金