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Collaborative Research: Modeling the Origin and Evolution of Hawaiian Plants

Collaborative Research: Modeling the Origin and Evolution of Hawaiian Plants
合作研究:模拟夏威夷植物的起源和进化
批准号:
2040347
负责人:
Michael Landis
金额:
$54.74万
依托单位:
依托单位国家:
美国
项目类别:
Standard Grant
财政年份:
2021
资助国家:
美国
项目状态:
已结题
起止时间:
2021-01-15 至 2024-12-31

项目摘要

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中文摘要
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英文摘要
Where we find species living today reflects not only how and when their direct ancestors evolved, but also where they evolved. The inseparable relationship between geological and evolutionary history is especially pronounced in volcanic island systems, where the formation, erosion, and subsidence of islands are expected to drive the origin of new species. Within the Hawaiian Islands, such processes have occurred dozens of times and given rise to over 1,000 flowering plant species found nowhere else in the world. Understanding how the Hawaiian flora originated and diversified can help direct conservation efforts, particularly for rare plants. This research will develop a suite of new statistical modeling software to reconstruct how, when, and where groups of closely related species originate, disperse, and go extinct among regions with complex geological histories. The project will integrate existing museum collections and newly collected plant specimens to generate a large genomic dataset for nearly 400 understudied Hawaiian plant populations, then infer how this diversity originated with the newly developed software. In addition to training numerous undergraduate, graduate, postdoctoral, and garden-affiliated researchers through the research project itself, two computational biogeography workshops to train early career researchers will be offered, and a series of publicly available teaching modules on the biogeography of Hawaiian plants will be developed.The project has two overarching objectives. The first objective will develop stochastic models and inference methods to jointly model speciation, extinction, and dispersal processes in the context of a spatiotemporally variable geography. These modeling tools will be made freely available through the open source Bayesian phylogenetics software, RevBayes, to enable other researchers to repurpose the new methods for systems apart from Hawaiian plant biogeography. The second objective will reconstruct the biogeographical histories of 12 understudied, but ecologically diverse, Hawaiian plant radiations. For this, the researchers will collect new plants and tissues to complete several genus-level collections managed by the National Tropical Botanical Garden. The researchers will then generate standardized phylogenomic datasets, using the Angiosperm-353 protocol, for two purposes. First, by evaluating the new phylogenomic data in concert with morphological, ecological, and biogeographical data, the researchers will resolve long-standing puzzles regarding the taxonomy of the 12 plant radiations, including ecologically and morphologically distinctive genera. Second, the new phylogenetic software will be used to infer evolutionary relationships, origination times, and biogeographical histories for the flora, to gain new insights into the biogeographical drivers of island plant radiations.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
期刊论文(10)
专著(0)
科研奖励(0)
会议论文
Fast Bayesian Inference of Phylogenies from Multiple Continuous Characters
多个连续性状的系统发育的快速贝叶斯推断
DOI: 10.1093/sysbio/syad067
发表时间: 2023
期刊: Systematic Biology
影响因子: 6.5
作者: [Zhang, Rong, Drummond, Alexei J., Mendes, Fábio K., Matschiner, ed., Michael]
通讯作者: Matschiner, ed., Michael
RevGadgets: An R package for visualizing Bayesian phylogenetic analyses from RevBayes
RevGadgets:用于可视化 RevBayes 的贝叶斯系统发育分析的 R 包
DOI: 10.1111/2041-210x.13750
发表时间: 2022
期刊: Methods in Ecology and Evolution
影响因子: 6.6
作者: [Tribble, Carrie M., Freyman, William A., Landis, Michael J., Lim, Jun Ying, Barido‐Sottani, Joellë, Kopperud, Bjørn Tore, Hӧhna, Sebastian, May, Michael R.]
通讯作者: May, Michael R.
DOI: 10.1038/s41559-022-01823-x
发表时间: 2022-07-18
期刊: NATURE ECOLOGY & EVOLUTION
影响因子: 16.8
作者: [Donoghue, Michael J., Eaton, Deren A. R., Edwards, Erika J.]
通讯作者: Edwards, Erika J.
Genomics expands the mammalverse
基因组学扩大了哺乳动物的范围
DOI: 10.1126/science.add2209
发表时间: 2023
期刊: Science
影响因子: 56.9
作者: [Upham, Nathan S., Landis, Michael J.]
通讯作者: Landis, Michael J.
NSF Postdoctoral Fellowship in Biology FY 2016
  • 批准号:
    1612153
  • 项目类别:
    Fellowship Award
  • 资助金额:
    $13.8万
  • 财政年份:
    2017
  • 负责人:
    Michael Landis
  • 依托单位:
国内基金
海外基金
Research on Quantum Field Theory without a Lagrangian Description
  • 批准号:
    24ZR1403900
  • 项目类别:
    省市级项目
  • 资助金额:
    --
  • 批准年份:
    2024
  • 负责人:
    SATOSHI NAWATA
  • 依托单位:
Cell Research
Cell Research
Cell Research (细胞研究)