Excellence in Research: Elucidating Factors that Affect Substrate Promiscuity of Bacterial Capsule Polymerases for Synthesis of Novel Polysaccharides

卓越研究：阐明影响细菌荚膜聚合酶合成新型多糖底物混杂性的因素

• 批准号: 2100978
• 负责人: James Wachira
• 金额: $ 55万
• 依托单位: Morgan State University
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-06-01 至 2024-05-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=2100978&HistoricalAwards=false
• 关键词: Excellence; Research; Elucidating; Factors; Affect

Non-Technical Abstract: Heavy metal pollution of water poses environmental risks. Bacterial Carbohydrate biomaterials, due to their chemical properties, can bind to metal cations very well and therefore have the potential to be used in the development of technologies for removing environmental heavy metal contamination, among other applications. Despite being one of the major classes of macromolecules, such bacterial carbohydrate biomaterials as well as the enzymes that synthesize them are not fully understood. More specifically, there is a lack of knowledge of (1) the three-dimensional structure of most carbohydrate-producing enzymes and (2) the rules that determine what specific types of compounds these enzymes could use to synthesize new carbohydrate biomaterial structures. The team of researchers on this project seek to gain fundamental knowledge into these two areas using computational and laboratory research approaches. Outcomes of this work will provide key findings to inform future studies leading to the design of carbohydrate-based biomaterials with enhanced metal-binding properties. The proposed work will also broaden participation of underrepresented minorities (URMs) in biomaterials research and advanced computational tools through research opportunities and curricular revisions at Morgan State University. Technical Abstract: Bacterial capsular polysaccharides, found on the outer surface of many Gram-negative bacteria, differ in length, composition, and structural properties. These polymers may provide new environmentally friendly sources of biomaterials for bioremediation, cargo-delivery systems, and biologically active polymers. An understanding of capsule-producing enzymes is critical to the design of new carbohydrate structures to serve in these applications. However, many of these enzymes have been poorly studied and there are very few known 3-dimensional structures. The proposed project seeks to study the rules governing nucleotide donor substrate specificity of the Neisseria meningitidis serogroup W (NmW) capsule polymerase as a basis for investigating its potential to serve as an enzymatic tool for the synthesis of novel polysaccharide structures. The long-term goal is to design polysaccharide-based biomaterials with improved metal remediation activity. The project team will work in coordination to carry out the following objectives: (1) Identification of key amino acids that modulate specificity of the NmW capsule polymerase using modeling, molecular dynamics simulations and mutational approaches; (2) Determination of binding kinetics and enzymatic activity of natural and modified substrates using surface plasmon resonance and bioluminescence assays; and (3) Computational modeling and molecular dynamics simulations of proposed novel carbohydrate polymers and characterization of enzymatically-produced polysaccharides. The proposed work will broaden participation of underrepresented minorities (URMs) in biomaterials research and advanced computational tools through student research opportunities at the high school, undergraduate and graduate level. In addition, a research-based bioinformatics activity will be incorporated into undergraduate and graduate Biochemistry courses. Thus, this project will provide research and educational training to students from URMs in the STEM workforce.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

摘要：水体重金属污染具有环境风险。细菌碳水化合物生物材料，由于其化学性质，可以很好地结合金属阳离子，因此有潜力用于开发去除环境重金属污染的技术，以及其他应用。尽管是大分子的主要类别之一，但这种细菌碳水化合物生物材料以及合成它们的酶尚未完全了解。更具体地说，缺乏以下知识：(1)大多数产生碳水化合物的酶的三维结构；(2)决定这些酶可以使用哪些特定类型的化合物来合成新的碳水化合物生物材料结构的规则。这个项目的研究团队试图通过计算和实验室研究方法来获得这两个领域的基础知识。这项工作的结果将为未来的研究提供关键发现，从而设计出具有增强金属结合特性的碳水化合物基生物材料。拟议的工作还将通过摩根州立大学的研究机会和课程修订，扩大代表性不足的少数民族（urm）在生物材料研究和先进计算工具方面的参与。技术摘要：细菌荚膜多糖存在于许多革兰氏阴性菌的外表面，其长度、组成和结构性质各不相同。这些聚合物可能为生物修复、货物输送系统和生物活性聚合物提供新的环保生物材料来源。了解胶囊生成酶对于设计用于这些应用的新碳水化合物结构至关重要。然而，许多这些酶的研究很少，很少有已知的三维结构。该项目旨在研究奈瑟菌脑膜炎球菌血清群W （NmW）胶囊聚合酶的核苷酸供体底物特异性的规则，作为研究其作为合成新型多糖结构的酶促工具的潜力的基础。长期目标是设计具有改进金属修复活性的多糖基生物材料。项目团队将协同工作以实现以下目标：(1)利用建模、分子动力学模拟和突变方法确定调节NmW胶囊聚合酶特异性的关键氨基酸；(2)利用表面等离子体共振和生物发光测定天然和修饰底物的结合动力学和酶活性；(3)提出的新型碳水化合物聚合物的计算建模和分子动力学模拟以及酶促多糖的表征。拟议的工作将通过学生在高中、本科和研究生阶段的研究机会，扩大未被充分代表的少数民族（urm）在生物材料研究和先进计算工具方面的参与。此外，基于研究的生物信息学活动将被纳入本科和研究生的生物化学课程。因此，该项目将为来自urm的STEM劳动力的学生提供研究和教育培训。该奖项反映了美国国家科学基金会的法定使命，并通过使用基金会的知识价值和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Towards Computationally Guided Design and Engineering of a Neisseria meningitidis Serogroup W Capsule Polymerase with Altered Substrate Specificity

• DOI: 10.3390/pr9122192
• 发表时间: 2021-12-01
• 期刊: PROCESSES
• 影响因子: 3.5
• 作者: Paudel，Subhadra;Wachira，James;McCarthy，Pumtiwitt C.
• 通讯作者: McCarthy，Pumtiwitt C.