Digitisation / Cataloguing of non-textual objects: eScience-compliant standards for morphology
Digitisation / Cataloguing of non-textual objects: eScience-compliant standards for morphology
批准号:
248394582
负责人:
Dr. Jan Decher
金额:
$0.0万
依托单位国家:
德国
项目类别:
Cataloguing and Digitisation (Scientific Library Services and Information Systems)
财政年份:
2014
资助国家:
德国
项目状态:
已结题
起止时间:
2013-12-31 至 2018-12-31
中文摘要
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英文摘要
Within the last decades, research in life sciences has changed considerably. Today, many scientists use computers for data exploration, compile new datasets from openly available data and analyze them under new premises. This eScience approach requires data to be openly available through the Internet and utilizes applications of the Semantic Web. Unfortunately, morphology and morphological taxonomy do not take part in eScience yet, because 1) accessible morphological content is restricted to published literature, and corresponding sources of data and raw data (serial sections, images, etc.) often get lost; 2) to date, morphological descriptions cannot be deposited in general data repositories, because respective eScience-compliant standards are nonexistent. The solution to both problems involves the use of semantically transparent terminologies, i.e. ontologies.Applying a user-centered-design approach and in close coordination with four use case studies, we will develop eScience-compliant standards for morphology and three new ontology-based modules for the morphological data repository Morph•D•Base: 1) for morphological descriptions, 2) graphical image content annotations, and 3) for taxonomic descriptions and automatically generated dynamic multiple entry identification keys. Based on the four use case studies, we will test their usability regarding increasing the accessibility of morphological data for non-experts, eScience-compliant standardization of taxonomic descriptions, the digitization of natural history collections, and for studies of comparative morphology.
期刊论文(13)
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DOI:
10.1111/cla.12145
发表时间:
2016-12-01
期刊:
CLADISTICS
影响因子:
3.6
作者:
[Goepel, Torben, Richter, Stefan]
通讯作者:
Richter, Stefan
Using Semantic Programming for Developing a Web Content Management System for Semantic Phenotype Data
使用语义编程开发语义表型数据的 Web 内容管理系统
DOI:
10.1007/978-3-030-06016-9_19
发表时间:
2019
期刊:
影响因子:
--
作者:
[L. Vogt, R. Baum, C. Köhler, S. Meid, B. Quast, P. Grobe]
通讯作者:
P. Grobe
SOCCOMAS: a FAIR web content management system that uses knowledge graphs and that is based on semantic programming
SOCCOMAS:一个使用知识图且基于语义编程的 FAIR Web 内容管理系统
DOI:
10.1093/database/baz067
发表时间:
期刊:
Database: The Journal of Biological Databases and Curation
影响因子:
--
作者:
[L. Vogt, R. Baum, P. Bhatty, C. Köhler, S. Meid, B. Quast, P. Grobe]
通讯作者:
P. Grobe
Assessing similarity: on homology, characters and the need for a semantic approach to non‐evolutionary comparative homology
评估相似性:关于同源性、特征以及对非进化比较同源性语义方法的需求
DOI:
10.1111/cla.12179
发表时间:
2017
期刊:
Cladistics
影响因子:
3.6
作者:
[L. Vogt]
通讯作者:
L. Vogt
The First Organ‐Based Ontology for Arthropods (Ontology of Arthropod Circulatory Systems ‐ OArCS) and its Integration into a Novel Formalization Scheme for Morphological Descriptions
第一个基于器官的节肢动物本体(节肢动物循环系统本体 - OArCS)及其与形态描述的新型形式化方案的整合
DOI:
10.1093/sysbio/syw108
发表时间:
2017
期刊:
Systematic Biology
影响因子:
6.5
作者:
[C.S. Wirkner, T. Göpel, J. Runge, J. Keiler, B.-J. Klussmann-Fricke, K. Huckstorf, S. Scholz, I. Mikó, M. Yoder, S. Richter]
通讯作者:
S. Richter
共 9 条
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