Development of cryogenic electron microscopy for probing phase separation in lipid membranes

用于探测脂质膜相分离的低温电子显微镜的发展

• 批准号: 2204126
• 负责人: Frederick Heberle
• 金额: $ 68.42万
• 依托单位: University of Tennessee Knoxville
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2022
• 资助国家: 美国
• 起止时间: 2022-07-01 至 2025-06-30
• 项目状态: 未结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=2204126&HistoricalAwards=false
• 关键词: Development; cryogenic; electron; microscopy; probing

With the support of the Chemistry of Life Processes (CLP) Program in the Division of Chemistry, Frederick A. Heberle of the University of Tennessee and M. Neal Waxham of the University of Texas Health Science Center at Houston are developing cryogenic electron microscopy (cryo-EM) for the study of lipid membranes. These membranes provide crucial structure to living organisms, forming the boundary between a cell and its external environment as well as the boundaries of internal cellular compartments. Scientists have long been puzzled by the unusually large number of different lipids found in some cell membranes; for example, the outermost plasma membrane of mammalian cells contains several hundred chemically distinct lipid species. Mixtures of many components often result in phase separation, such as occurs when oil is mixed with water. An intriguing hypothesis is that an analogous phase separation occurs in some cell membranes, in which membrane lipids self-organize into clusters termed lipid rafts that have properties different from those of the sea of lipids surrounding them. A large body of evidence suggests that rafts are useful to the cell and play an important role in many cell functions. However, their small size (less than 1000 times the width of a human hair) makes them impossible to see with a conventional microscope, and consequently our knowledge of raft structure is limited. By using a beam of electrons rather than visible light as the illumination source, it becomes possible to image much smaller structures, including raft-like domains in artificial membranes that mimic the lipid composition of cell membranes as shown in preliminary studies from these laboratories. This project seeks to optimize the quality of cryo-EM images of membranes and thus, their information content, through various methods of enhancing contrast; to determine the minimum raft size that can be detected; and to apply the improved imaging methodology to obtain pictures of rafts in genuine cell membranes. Another goal of this project is the training of graduate students in experimental and computational methods to prepare them for careers in STEM (science, technology, engineering and mathematics) fields. The researchers create useful, freely available tools for other researchers who wish to use cryo-EM to study lipid membranes. An important part of the project is a public outreach program to enhance awareness of and appreciation for physical chemistry research and its application to the biological sciences. Cell membranes have an enormous capacity for self-organization conferred by the structural diversity of their lipidomes. Within the outermost plasma membrane, non-ideal interactions between different classes of lipids results in a phenomenon akin to liquid phase separation that can direct the spatial organization of membrane proteins and thus influence cell function. The phase domains or “rafts” are nanoscopic in size under normal conditions, precluding their detection by conventional light microscopy and motivating the development of alternative imaging techniques with greater spatial resolution. This project will develop cryo-EM as one such technique for investigating the phase behavior of probe-free, unsupported membranes at length scales relevant to lipid rafts. A primary objective is to optimize the experimental and analysis workflow for this new and specialized imaging application. Key to this effort is the combined use of atomistic molecular simulations and mesoscopic vesicle models to generate synthetic ground-truth image datasets, thereby enabling unambiguous estimates of the accuracy and precision of measured parameters and establishing the resolution limitations of the technique. The optimized workflow will be tested on well-characterized experimental systems for which domain sizes and area fractions have been independently established. A final scientific objective is the expansion of the technique into cellular membranes that are now accessible with cryo-EM, thus paving the way for a deeper understanding of lateral heterogeneity in complex lipid and protein mixtures. The PI and co-PI will train graduate students in the study of lipid phase separation and the physical chemistry of mixtures, and will develop protocols, software tools, and ground-truth data sets to expand the community of researchers using cryo-EM to study lipid membranes.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

在化学系生命过程化学(CLP)计划的支持下，田纳西大学的Frederick A.Heberle和休斯顿德克萨斯大学健康科学中心的M.Neal Waxham正在开发用于研究脂膜的低温电子显微镜(Cryo-EM)。这些膜为活着的有机体提供了至关重要的结构，形成了细胞与其外部环境之间的边界以及细胞内部隔间的边界。长期以来，科学家们一直对在一些细胞膜中发现的异常大量的不同脂类感到困惑；例如，哺乳动物细胞最外层的质膜包含数百种化学上不同的脂类。许多组分的混合物通常会导致相分离，例如当油与水混合时就会发生这种情况。一个有趣的假说是，在一些细胞膜中发生了类似的相分离，其中膜脂自组织成被称为脂筏的簇，其性质与其周围的脂海不同。大量证据表明，木筏对细胞是有用的，并在许多细胞功能中发挥重要作用。然而，它们的体积很小(不到人类头发宽度的1000倍)，所以用传统的显微镜无法看到它们，因此我们对木筏结构的了解有限。通过使用电子束而不是可见光作为照明源，可以成像更小的结构，包括这些实验室的初步研究显示的人造膜中模仿细胞膜脂质成分的浮筏状结构域。该项目力求通过各种增强对比度的方法，优化冷冻-EM膜图像的质量，从而优化其信息含量；确定可以检测到的最小筏子尺寸；并应用改进的成像方法，获得真正细胞膜中的筏子的图像。该项目的另一个目标是对研究生进行实验和计算方法方面的培训，为他们在STEM(科学、技术、工程和数学)领域的职业生涯做准备。研究人员为其他希望使用冷冻-EM研究类脂膜的研究人员创造了有用的、免费可用的工具。该项目的一个重要部分是一个公共宣传方案，以提高对物理化学研究及其在生物科学中的应用的认识和欣赏。细胞膜具有巨大的自组织能力，这是由其脂体的结构多样性所赋予的。在最外层的质膜中，不同种类的脂类之间的非理想相互作用导致了类似于液相分离的现象，这种现象可以指导膜蛋白的空间组织，从而影响细胞功能。相域或“木筏”在正常情况下是纳米级的，无法用传统的光学显微镜检测到，并推动了具有更高空间分辨率的替代成像技术的发展。该项目将开发低温电子显微镜作为一种技术，用于在与脂筏相关的长度尺度上研究无探针、无支撑膜的相行为。一个主要目标是为这一新的和专门的成像应用优化实验和分析工作流程。这项工作的关键是结合使用原子分子模拟和介观泡囊模型来生成合成地面真实图像数据集，从而能够明确估计测量参数的准确性和精确度，并确定该技术的分辨率限制。优化的工作流程将在特征良好的实验系统上进行测试，这些系统的域大小和面积分数已经独立建立。最终的科学目标是将这项技术扩展到细胞膜，现在可以使用冷冻EM，从而为更深入地了解复杂脂质和蛋白质混合物的横向异质性铺平道路。PI和共同PI将培训研究生研究脂质相分离和混合物的物理化学，并将开发协议、软件工具和地面真实数据集，以扩大使用低温EM研究脂质膜的研究人员社区。该奖项反映了NSF的法定使命，并通过使用基金会的智力优势和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Visualizing lipid membrane structure with cryo-EM: past, present, and future

使用冷冻电镜可视化脂质膜结构：过去、现在和未来

• DOI: 10.1042/etls20220090
• 发表时间: 2023
• 期刊: Emerging Topics in Life Sciences
• 影响因子: 3.8
• 作者: Sharma, Karan D.;Heberle, Frederick A.;Waxham, M. Neal
• 通讯作者: Waxham, M. Neal

Serinc5 Restricts HIV Membrane Fusion by Altering Lipid Order and Heterogeneity in the Viral Membrane.

Serinc5 通过改变病毒膜中的脂质顺序和异质性来限制 HIV 膜融合。

• DOI: 10.1021/acsinfecdis.2c00478
• 发表时间: 2023
• 期刊: ACS infectious diseases
• 影响因子: 5.3
• 作者: Ward,AmandaE;Sokovikova,Daria;Waxham,MelvinNeal;Heberle,FrederickA;Levental,Ilya;Levental,KandiceR;Kiessling,Volker;White,JudithM;Tamm,LukasK
• 通讯作者: Tamm,LukasK