A systematic method of noise analysis for channels with single-channel conductance of fA level
A systematic method of noise analysis for channels with single-channel conductance of fA level
批准号:
17590184
负责人:
OIKI Shigetoshi
金额:
$2.3万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2005
资助国家:
日本
项目状态:
已结题
起止时间:
2005 至 2006
中文摘要
电压门控质子通道的单通道电导预计将低于ps。本研究探讨了评估这种小电导通道的噪声分析方法。全细胞记录小胶质细胞的电压门控质子通道。质子通道在去极化电位下的激活过程非常缓慢,需要很长的记录时间才能收集足够数量的电流迹线用于去极化脉冲。对于分析,我们发现最关键的一步是当前轨迹的选择上的趋势下降。在长时间的记录中,电流痕迹会改变它们的形状。目前显示这些系统性变化的痕迹,而不是随机变化,必须从分析中消除。对选择当前踪迹施加了几个标准。从这些选定的轨迹中进行总体平均。提取了不同实验条件下的脉动分量,并进行了功率谱和非平稳噪声分析。功率谱密度采用双洛伦兹拟合法。非平稳噪声分析的截止频率设定为5 kHz。绘制了方差-均值图,发现该图为踪迹的选择提供了有价值的标准。从选择具有不同标准的轨迹到方差均值曲线图的过程重复进行,直到拟合的参数收敛。从单通道电流幅值的方差均值图中估计出活动通道数和最大开放概率。电压门控质子通道的估计单通道电流为12fA。讨论了使用选定的踪迹改进数据分析的基本机制。
英文摘要
Single channel conductance of the voltage-gated proton channel was expected to be below pS. The noise analysis method for evaluating such small conductance channels was examined in this study. Whole-cell recordings of the voltage-gated proton channel from microglial cells were performed. The time course of activation at depolarization potential was very slow for the proton channel and long recording time was necessary to collect enough numbers of current traces for depolarizing pulses. For the analysis we found that the most critical step was detrend upon the selection of current traces. In the long time of recordings current traces change their shape. Current traces showing these systematic changes, rather than stochastic changes, must be eliminated from the analysis. Several criteria for selecting current traces were imposed. Ensemble average was performed from those selected traces. Fluctuating components were extracted and power-spectrum and non-stationary noise analysis were performed at various experimental conditions. Double-Lorentzian fit was done for the power spectral density. The cut-off frequency of 5 kHz was set for the non-stationary noise analysis. The variance-mean plot was drawn and we found that this plot gave valuable criteria for the selection of traces. The process from selecting traces with different criteria to the variance-mean plot was repeated until the fitted parameters were converged. From variance-mean plots amplitudes of single channel current, numbers of active channels and maximal open probability were estimated. The estimated single channel current for the voltage-gated proton channel was 12 fA. Underlying mechanisms for improvements of the data analysis using selected traces were discussed.
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Dictionary of Cell Biology
细胞生物学词典
DOI:
--
发表时间:
2005
期刊:
Asakura Pub. Co., Ltd.
影响因子:
--
作者:
[S.Oiki (Ishikawa, H., Kuroiwa, T., Nagata, K.Eds.)]
通讯作者:
K.Eds.)
Surface structure and its dynamic rearrangements of the KcsA Potassium channel upon gating and retrabutylammonium blocking.
KcsA 钾通道的表面结构及其在门控和四丁基铵阻断时的动态重排。
DOI:
--
发表时间:
2006
期刊:
J. Biol. Chem. 281
影响因子:
--
作者:
[Iwamoto, H, Shimizu, F, Inoue, T, Konno, Y, C. Sasaki, S. Oiki]
通讯作者:
S. Oiki
DOI:
10.1021/bi047722d
发表时间:
2005-02-15
期刊:
BIOCHEMISTRY
影响因子:
2.9
作者:
[Konno, T, Morii, T, Ikura, K]
通讯作者:
Ikura, K
DOI:
10.1085/jgp.200509377
发表时间:
2005-11-01
期刊:
JOURNAL OF GENERAL PHYSIOLOGY
影响因子:
3.8
作者:
[Ando, H, Kuno, M, Oiki, S]
通讯作者:
Oiki, S
DOI:
10.1074/jbc.m602018200
发表时间:
2006-09-22
期刊:
JOURNAL OF BIOLOGICAL CHEMISTRY
影响因子:
4.8
作者:
[Iwamoto, Masayuki, Shimizu, Hirofumi, Oiki, Shigetoshi]
通讯作者:
Oiki, Shigetoshi
共 12 条
Development of the epithelium-like complex membrane system
-
批准号:24659096
-
项目类别:Grant-in-Aid for Challenging Exploratory Research
-
资助金额:$2.5万
-
财政年份:2012
-
负责人:OIKI Shigetoshi
-
依托单位:
Single-molecule structure-function analysis of the pH-dependent gating of the KcsA potassium channel
-
批准号:23370067
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$13.23万
-
财政年份:2011
-
负责人:OIKI Shigetoshi
-
依托单位:
Structural and functional dynamics of the KcsA channel : Single molecule measurements of the conformational change during gating.
-
批准号:20247016
-
项目类别:Grant-in-Aid for Scientific Research (A)
-
资助金额:$28.29万
-
财政年份:2008
-
负责人:OIKI Shigetoshi
-
依托单位:
Developing an E. coli-expression-function platform for study of 3-D structure-function relationships of channel molecules
-
批准号:13680737
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.3万
-
财政年份:2001
-
负责人:OIKI Shigetoshi
-
依托单位:
Identification of the gate structure of ion channels
-
批准号:09680664
-
项目类别:Grant-in-Aid for Scientific Research (C)
-
资助金额:$2.11万
-
财政年份:1997
-
负责人:OIKI Shigetoshi
-
依托单位:
海外基金