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Supporting research on making linkage maps of marker, RFLP and RAPD loci in genome of sugi, Cryptomeria japonica D.Don

Supporting research on making linkage maps of marker, RFLP and RAPD loci in genome of sugi, Cryptomeria japonica D.Don
支持杉、柳杉基因组标记、RFLP、RAPD位点连锁图谱制作研究
批准号:
04304017
负责人:
OHBA Kihachiro
金额:
$11.52万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Co-operative Research (A)
财政年份:
1992
资助国家:
日本
项目状态:
已结题
起止时间:
1992 至 1994

项目摘要

项目成果

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中文摘要
翻译
杉杉(Sugi, Cryptomeria japonica D.Don)自古以来就是日本重要的林业树种。单倍体染色体数目为11,除两条染色体具有卫星缩窄或次级缩窄外,其他表型特征相似。本项目首先研究了在存在或不存在致死因子的情况下,同工酶、RFLP和RAPD等标记位点之间重组值的估计方法。通过观察到的分离比与每个位点的预期分离比的偏差大小来检验致死位点的存在。采用LOD评分评价模型中致死因子的适合度。用该方法对同工酶进行分离,分别与Lap、G6p、Dia-3连锁。在Kumotooshi和Okinoyama sugi杂交的3代后代中,共构建了164个位点,包括128个RFLP、33个RAPD、2个同工酶和1个矮子,共13个连锁群,总图谱距离为1190 cM。在13个连锁群中,有8个连锁群存在分离比偏差的聚集位点。在6个连锁群中检测到1个或2个致死基因,发现有了致死基因,图谱距离比无致死基因估计的要长。通过对单倍体巨生植物的分析,绘制了另一张包含175个RAPD位点的图谱。共有14个连锁群,总长度2212.3 cM。采用冷处理和荧光原位杂交技术对单倍体染色体进行了鉴定。尝试改进方法,用激光束切割后恢复了染色体碎片。
英文摘要
Sugi, Cryptomeria japonica D.Don has been a important forestry species in Japan sice old times. It has haploid chromosome number of 11 with similar phenotypic features except to two chromosomes which have a satelite or secondary constriction.In this project, firstly, studies were made on the methods for estimatin of recombination values between marker loci including isozyme, RFLP and RAPD loci with or without the presence of a lethal factor. Existence of a lethal locus was examined by the magnitude of deviation of the observed segregation ratio from expected one for each locus separately. The fitness of the model involving a lethal factor were evaluated by LOD scores. This method was applied for isozyme segregation and it was found a lethal gene linked to Lap, G6p, Dia-3 respectively.In a three generation progeny derived from a cross of Kumotooshi and Okinoyama sugi, 164 loci including 128 RFLP,33 RAPD,2 isozyme and 1 dwarf were put in a linkage map with 13 linkage groups with total map distance of 1,190 cM.Out of 13 linkage groups, there were 8 linkage groups which had clustered loci with deviated segregation ratios. One or two lethal genes were detected in 6 linkage groups, and it was found that with the lethal genes, map distances were elongated than those estimated by free of lethal gene. Another map in which 175 RAPD loci were placed, was made by analysis of haploid megagametophytes. It had 14 linkage groups with 2,212.3 cM in total.Discrimination of haploid chromosome was tried by clod treatment and fluorescence in situ hybridization. It was tried to improve the methods and chromosome fragments were recovered after cutting with laser beam.
期刊论文(5)
专著(0)
科研奖励(0)
会议论文
大庭 喜八郎,河崎 久男,倉本 哲嗣,津村 義彦,戸丸 信弘,内田 煌二 他6名: "スギゲノムの遺伝子及びRFLPの連鎖分析におけるアイソザイム遺伝子座の橋渡し方式に関する研究I劣性標識遺伝子ホモ個体の利用と胚致死遺伝子による分離比の偏りの補正" 筑波大学農林技術センター演習林報告. 8. 139-273 (1992)
Kihachiro Oba、Hisao Kawasaki、Tetsuji Kuramoto、Yoshihiko Tsumura、Nobuhiro Tomaru、Koji Uchida等6人:“日本柳杉基因组基因同工酶位点桥接方法及RFLP连锁分析的研究I.隐性标记基因纯合个体的利用和胚胎“致死基因导致的分离率偏差的校正”筑波大学农林技术中心实验林报告书 8. 139-273 (1992)。
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大庭喜八郎・河崎久男、外9名: "共優性遺伝子座間の連鎖分析における胚致死遺伝子座による分離比の偏りの補正" 筑波大学農林技術センター演習林報告. 9. 35-139 (1993)
Kihachiro Oba、Hisao Kawasaki 等 9 人:“共显性基因座之间连锁分析中胚胎致死基因座引起的分离率偏差的校正”筑波大学农林技术中心培训森林报告 9. 35-139 (1993)。
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大庭喜八郎・河崎久男、外8名: "共優性遺伝子座間の連鎖分析における胚致死遺伝子による分離比の偏りの補正" 筑波大学農林技術センター演習林報告. 9. 35-139 (1993)
Kihachiro Oba、Hisao Kawasaki 等 8 人:“共显性基因座连锁分析中胚胎致死基因引起的分离率偏差的校正”筑波大学农林技术中心培训森林报告 9. 35-139 (1993)。
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大庭喜八郎・河崎久男、外9名: "致死遺伝子座と標識遺伝子座、RFLP座およびRAPD座との組換価の推定" 筑波大学農林技術センター演習林報告. (印刷中).
Kihachiro Oba、Hisao Kawasaki 等 9 人:“致死基因座、标记基因座、RFLP 基因座和 RAPD 基因座之间的重组价值的估计”筑波大学农林技术中心实验森林报告(正在出版)。
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Taxodiaceae - its systematics and characteristics of species
  • 批准号:
    05041080
  • 项目类别:
    Grant-in-Aid for international Scientific Research
  • 资助金额:
    $14.08万
  • 财政年份:
    1993
  • 负责人:
    OHBA Kihachiro
  • 依托单位:
Studies on molecular and ecological genetics of in situ conservation of genetic resources of 7 species in genus Quercus
  • 批准号:
    05454039
  • 项目类别:
    Grant-in-Aid for General Scientific Research (B)
  • 资助金额:
    $4.1万
  • 财政年份:
    1993
  • 负责人:
    OHBA Kihachiro
  • 依托单位:
Studies on ecological genetics of beech ecosystem in north-eastern Japan
A PHYLOGENETICAL STUDY OF CRYPTOMERIA CUTTING-CULTIVARS BY MEANS OF ISOZYME ANALYSIS
海外基金