Systematic sequencing of the Escherichia coli genome
Systematic sequencing of the Escherichia coli genome
批准号:
04305005
负责人:
MIZOBUCHI Kiyoshi
金额:
$17.92万
依托单位国家:
日本
项目类别:
Grant-in-Aid for Co-operative Research (A)
财政年份:
1992
资助国家:
日本
项目状态:
已结题
起止时间:
1992 至 1993
中文摘要
大肠杆菌K-12菌株的基因组由一个4700千碱基(kb)的环状DNA分子组成,其中估计存在约4000个基因。在预设,2,300 kb核苷酸序列的总数已被片段分析。在此之前,我们已经确定了对应于染色体0-6分钟区域的连续274 kb的核苷酸序列。利用Kohara的有序克隆,我们的测序工作已经扩展到12分钟区域。在这个项目中,我们一共新确定了149188 bp。将该序列与已知序列相结合,共测序了274 kb中226 kb(82.5%)的6-12 min区域。新序列经分析鉴定出86个潜在的开放阅读框,其氨基酸序列与其他已报道的序列具有显著的相似性。该序列还包含至少5个IS元件和2种独特的重复序列,分别由3x-和5x-93 bp组成。
英文摘要
The genome of Escherichia coli strain K-12 consists of a circular DNA molecule of 4,700 kilobases (kb), in which about 4,000 genes have been estimated to be present. At preset, 2,300-kb nucleotide sequences in sum have fragmentally been analyzed. Previously, we have determined the nucleotide sequence of a contiguous 274 kb corresponding to the 0-6 min region of the chromosome. Using the orderd clones of Kohara, our sequencing efforts have being extended to the 12 min region. In this project, we have determined newly a total of 149,188 bp. Combination of this sequence and the known sequences indicates that sequencing of 226 out of the 274 kb(82.5%) in the 6-12 min region has been completed. Analysis of the new sequence identified 86 potential open reading frames, whose amino acid sequences showed significant similarity to other reported sequences. The sequence also contains at least 5 IS elements and 2 types of unique repetitive sequences consisting of 3x- and 5x-93 bp, respectively.
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Fujita,N.: "Systematic sequencing of the Escherichia coli genome:analysis of the 2.4-4.1 min(110,917-193,643 bp)" Nucleic Acids Res.23(in press). (1994)
Fujita,N.:“大肠杆菌基因组的系统测序:2.4-4.1 分钟(110,917-193,643 bp)的分析”Nucleic Acids Res.23(出版中)。
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Nakahigashi,K.: "Isolation and characterization of a light-sensitive mutant of Escherichia coli K-12 with a mutation in a gene that is required for the biosynthesis of ubiquinone" J.Bacteriol.174. 7352-7359 (1992)
Nakahigashi,K.:“大肠杆菌 K-12 光敏突变体的分离和表征,该突变体具有泛醌生物合成所需的基因突变”J.Bacteriol.174。
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Kawakami,K.: "Differential regulation of two genes encoding lysyl-tRNA synthetase for a lysS null mutation" Mol.Microbiol.6. 1739-1746 (1992)
Kawakami,K.:“编码赖氨酰-tRNA 合成酶的两个基因对 lysS 无效突变的差异调节”Mol.Microbiol.6。
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Yuzawa,H.: "Heat induction of sigma^<32> synthesis mediated by mRNA secondary structure:a primary step of the heat shock response in Escherichia coli" Nucleic Acids Res.21. 5449-5455
Yuzawa,H.:“mRNA二级结构介导的σ^32合成的热诱导:大肠杆菌热休克反应的第一步”Nucleic Acids Res.21。
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Kasai,T.: "Efficient large-scale sequencing of the Escherichia coli genome:implement of transposon- and PCR-based strategy of the analysis of ordered phage clones" Nucleic Acids Res.20. 6509-6515 (1992)
Kasai,T.:“大肠杆菌基因组的高效大规模测序:基于转座子和 PCR 的有序噬菌体克隆分析策略的实施”Nucleic Acids Res.20。
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共 30 条
Studies of diversification of plasmid replication regions by genetic recombination
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批准号:04454001
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项目类别:Grant-in-Aid for General Scientific Research (B)
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资助金额:$4.16万
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财政年份:1992
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负责人:MIZOBUCHI Kiyoshi
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依托单位:
海外基金