How HSP90 shapes genotype-phenotype relationships to alter treatment outcome in cancer

HSP90 如何塑造基因型-表型关系以改变癌症治疗结果

• 批准号: 10320830
• 负责人: Georgios Karras
• 金额: $ 19.22万
• 依托单位: UNIVERSITY OF TX MD ANDERSON CAN CTR
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-02-05 至 2023-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10320830
• 关键词: Address; BRCA1 Protein; Binding; Biological; Buffers; Cancer Biology; Cancer Patient; Cancer cell line; Cell Line; Cells; Clinical; Clinical Investigator; Collaborations; Complement; DNA Repair; DNA Repair Gene; Dana-Farber Cancer Institute; Data; Diagnosis; Disease remission; Drug resistance; ERCC2 gene; Elements; Environment; Epigenetic Process; Evolution; Fanconi Anemia Complementation Group A Protein; Fanconi Anemia pathway; Fanconi' s Anemia; Funding; Funding Opportunities; Genes; Genetic Engineering; Genotype; HSP 90 inhibition; Heat-Shock Proteins 70; Heat-Shock Proteins 90; Homeostasis; Hospitals; Human; In Vitro; Institutes; Institution; K22 Award; Malignant - descriptor; Malignant Neoplasms; Mammary Neoplasms; Measures; Mediating; Mendelian disorder; Missense Mutation; Molecular Chaperones; Mutation; Non-Malignant; Oncogenes; Oncogenic; Outcome; Patients; Pharmaceutical Preparations; Phase; Phenotype; Positioning Attribute; Proteins; Publishing; Research; Resources; Role; Secure; Shapes; Testing; Therapeutic; Therapeutic Intervention; Training; Transformed Cell Line; Treatment Efficacy; Treatment outcome; Woman; Work; base; cancer cell; cancer therapy; career; design; drug sensitivity; efficacious treatment; gene interaction; genetic approach; genetically modified cells; genotoxicity; improved; individual patient; individualized medicine; inhibitor; insight; loss of function; mutant; neoplastic cell; novel strategies; ovarian neoplasm; patient oriented research; patient stratification; protein folding; protein protein interaction; response; standard of care; therapy resistant; tumor

PROJECT SUMMARY Cancers evolve through the sequential acquisition of mutations that collectively perturb cellular homeostasis thereby unleashing havoc. How do these deranged cells survive, form tumors, amass additional deleterious mutations and acquire resistance to therapies? I propose to tackle these important questions using a novel approach founded on principles of protein folding. My work has demonstrated that the protein-folding chaperone heat-shock protein 90 (HSP90) alleviates or “buffers” the deleterious biological effects of human mutations. In doing so, HSP90 alters cellular drug sensitivities and influences the clinical course of diverse Mendelian disorders. Here, I hypothesize that by buffering mutations, HSP90 enables tumor cells to thwart cancer therapies. The proposed work will determine how HSP90, acting epigenetically, alters the consequences of specific DNA repair mutations in cancers, and how HSP90 buffering influences tumor responses to genotoxic therapies. I will directly address these questions by measuring the effects of malignant transformation itself on HSP90's ability to buffer mutations in DNA repair proteins. I will determine the ability of HSP90 to buffer a panel of well-characterized mutants in the Fanconi Anemia (FA) DNA repair pathway, using cell lines transformed in vitro by transduction with defined oncogenic elements, and using genetically engineered FA patient-derived cancer cell lines. As a therapeutically relevant complement to these studies, I will also investigate the role of HSP90 in buffering mutant DNA repair proteins and how HSP90 helps shape tumor responses to genotoxic drugs. I will employ a high-throughput functional genetics approach to parse clinical cancers based on the presence of HSP90-buffered vs. non-buffered mutations (defined by my recently published and ongoing work) in DNA repair proteins. Results will be correlated with clinical outcome following standard-of-care treatment with genotoxic drugs. This K22 award will help me secure the funds for an independent position at a leading institution, establish a record of independent research, and generate preliminary data for the R01 phase of my career. It will also provide me with training in cancer biology and patient-oriented research skillsets that will help me compete for a broader spectrum of funding opportunities. The work I propose will determine how the influence of HSP90 on the accumulation of mutations evolves as cancers progress and how its evolving role enables the emergence of drug resistance. Results will provide a theoretical framework permitting the identification and use of HSP90-buffered mutations for patient stratification. This will contribute to the design of individualized treatments likely to provide the most benefit, including the use of existing HSP90 inhibitors in non-conventional ways. Thus, this work will provide important insights into fundamental mechanisms of tumor evolution as well as pioneer a strategy for improving the precision and efficacy of therapeutic interventions relevant to the treatment of many cancers.

项目摘要 癌症的发展是通过突变的连续获得，这些突变共同扰乱了细胞的稳态 从而引发大破坏这些错乱的细胞是如何生存的，形成肿瘤，积累额外的有害物质， 突变并获得对治疗的抗性？我建议用一本小说来解决这些重要问题 基于蛋白质折叠原理的方法。我的研究表明蛋白质折叠 伴侣蛋白热休克蛋白90（HSP 90）抑制或"缓冲"人类免疫缺陷病毒的有害生物效应。 突变。在此过程中，HSP90改变了细胞对药物的敏感性，并影响了多种肿瘤的临床进程。 孟德尔紊乱。在这里，我假设通过缓冲突变，HSP90使肿瘤细胞能够阻碍肿瘤细胞的生长。 癌症治疗这项工作将确定HSP90是如何在表观遗传学上起作用的， 癌症中特定DNA修复突变的后果，以及HSP90缓冲如何影响肿瘤 对遗传毒性治疗的反应。我将通过测量恶性肿瘤的影响来直接解决这些问题。 HSP90对DNA修复蛋白突变的缓冲能力。我将决定 HSP90缓冲范可尼贫血（FA）DNA修复途径中一组充分表征的突变体，使用 通过用确定的致癌元件转导体外转化的细胞系， 工程化的FA患者来源的癌细胞系。作为这些研究的治疗相关补充，我 还将研究HSP90在缓冲突变DNA修复蛋白中的作用，以及HSP90如何帮助塑造 肿瘤对遗传毒性药物的反应。我将采用高通量功能遗传学方法来解析 基于HSP90缓冲与非缓冲突变的存在的临床癌症（由我最近定义） 已发表和正在进行的工作）。结果将与以下临床结局相关 基因毒性药物的标准治疗这个K22奖将帮助我获得资金， 在领先机构的独立职位，建立独立研究的记录，并产生 我职业生涯R01阶段的初步数据。它还将为我提供癌症生物学方面的培训， 以病人为导向的研究技能，这将有助于我竞争更广泛的资助机会。 我提出的工作将确定HSP 90对突变积累的影响如何演变， 癌症的进展以及其不断演变的作用如何导致耐药性的出现。结果将提供 允许鉴定和使用HSP90缓冲突变的理论框架 分层这将有助于设计可能提供最大益处的个性化治疗， 包括以非常规方式使用现有的HSP 90抑制剂。这项工作将提供重要的 深入了解肿瘤演变的基本机制，并开创了一种改善 与许多癌症的治疗相关的治疗干预的精确性和有效性。

项目成果

Protein-Folding Chaperones Predict Structure-Function Relationships and Cancer Risk in BRCA1 Mutation Carriers.

蛋白质折叠伴侣可预测 BRCA1 突变携带者的结构功能关系和癌症风险。

• DOI: 10.1101/2023.09.14.557795
• 发表时间: 2023
• 期刊: bioRxiv : the preprint server for biology
• 作者: Gracia,Brant;Montes,Patricia;Gutierrez,AngelicaMaria;Arun,Banu;Karras,GeorgiosIoannis
• 通讯作者: Karras,GeorgiosIoannis

An ELISA-based platform for rapid identification of structure-dependent nucleic acid-protein interactions detects novel DNA triplex interactors.

• DOI: 10.1016/j.jbc.2022.102398
• 发表时间: 2022-10
• 期刊: JOURNAL OF BIOLOGICAL CHEMISTRY
• 影响因子: 4.8
• 作者: Economos, Nicholas G.;Thapar, Upasna;Balasubramanian, Nanda;Karras, Georgios I.;Glazer, Peter M.
• 通讯作者: Glazer, Peter M.