Advancing Ultraviolet Photodissociation Mass Spectrometry for Precision Mapping of Protein Glycosylation
Advancing Ultraviolet Photodissociation Mass Spectrometry for Precision Mapping of Protein Glycosylation
批准号:
10350600
负责人:
Edwin E Escobar
金额:
$2.77万
依托单位国家:
美国
项目类别:
财政年份:
2021
资助国家:
美国
项目状态:
已结题
起止时间:
2021-01-01 至 2022-07-31
关键词:
Amino AcidsAtherosclerosisBiochemicalBiologicalC-terminalCell CommunicationCell membraneCell physiologyCellsChemicalsCodeComplexConsensusConsensus SequenceCoupledDefectDevelopmentDiseaseDisease PathwayDissociationEnzymesEpigenetic ProcessEukaryotaEventFunctional disorderGene ProteinsGlycopeptidesGlycoproteinsGlycosidesGoalsGoldHealthHumanImmune responseImmunityIonsKnowledgeLengthLightLinkLocationMalignant NeoplasmsMapsMass Spectrum AnalysisMediatingMessenger RNAMetabolismMethodologyMethodsModificationN-Glycosylation SiteNatureNeoplasm MetastasisPathogenicityPathway interactionsPatternPeptidesPhosphorylationPhotonsPlayPolysaccharidesPositioning AttributePost Translational Modification AnalysisPost-Translational Protein ProcessingProcessProlineProtein GlycosylationProtein-Serine-Threonine KinasesProteinsProteomeProteomicsRNA Polymerase IIRegulationReportingResearchResolutionRoleSamplingSerineSignal TransductionSiteStructureStructure-Activity RelationshipTechniquesThreonineThrombosisTyrosineViralViral Envelope ProteinsVirus Diseasesanalytical methodanalytical toolbaseglycoproteomicsglycosylationhuman diseaseinnovationinsightpolysulfated glycosaminoglycansugartandem mass spectrometrytooltumorultraviolet
中文摘要
项目总结
糖基化在细胞中蛋白质的所有基本特征中起着结构和功能上的作用。尽管有大量的
证据表明O-糖基化在细胞过程、O-连接多糖的性质和特定位置是至关重要的
O-葡聚糖的性质尚未得到很好的描述。在很大程度上,共识序列基序N-X-S/T使可靠
预测N-糖基化位点,但我们对O-糖基化的了解因缺乏简单的共识基序而受阻。
因此,我们目前对O-糖基化的影响的了解是不完整的。全面发展的一个主要障碍
用基于质谱学的蛋白质组学工作流程表征O-糖基化是显著的中性丢失
不稳定的O-连接的葡聚糖使用传统的碰撞激活解离,阻碍了精确的定位。此外,没有
全球存在的酶可以裂解所有可能的O-葡聚糖β-O-糖苷连接,从而阻碍酶促糖分析。
质谱仪与紫外光解离(UVPD)联用被定位为一种重要的研究工具
糖蛋白组学通过实现对与人类健康有关的蛋白质的PTM残基水平的解析。UVPD可以
被利用来同时提供多肽的高序列覆盖率和不稳定修饰的保留,因此
允许O-葡聚糖作图和结构表征。我开发适用于LC-UVPD-MS的创新策略
对于靶向和全局糖蛋白质组的应用,将提供对糖基化与
疾病途径,并引发新的生物学问题。
英文摘要
PROJECT SUMMARY
Glycosylation plays a structural and functional role in all fundamental features of proteins in cells. Despite substantial
evidence suggesting O-glycosylation is vital in cellular processes, the nature of O-linked glycans and the specific locations
of O-glycans are not well characterized. To a large extent, the consensus sequence motif N-X-S/T enables reliable
prediction of N-glycosylation sites, but our knowledge of O-glycosylation is hampered by a lack of simple consensus motifs.
As a result, our current understanding of the impact of O-glycosylation is incomplete. A major obstacle to comprehensive
characterization of O-glycosylation by mass spectrometry-based proteomic workflows is the prominent neutral loss of
labile O-linked glycans using conventional collisional activated dissociation, hampering precise localization. Moreover, no
global enzyme exists that can cleave every possible O-glycan β-O-glycosidic linkage, thwarting enzymatic glycomic analysis.
Mass spectrometry coupled with ultraviolet photodissociation (UVPD) is positioned to be an important tool in
glycoproteomics by enabling residue-level resolution of PTMs of proteins implicated in human health. UVPD can be
harnessed to provide simultaneously high sequence coverage of peptides and retention of labile modifications, thus
allowing O-glycan mapping and structural characterization. My development of innovative LC-UVPD-MS strategies suitable
for both targeted and global glycoproteomic applications will provide new insight into the correlation of glycosylation with
disease pathways and drive new biological questions.
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