Integrating Common and Rare Variation to Discover Genes Associated with Tourette Syndrome
Integrating Common and Rare Variation to Discover Genes Associated with Tourette Syndrome
批准号:
10359202
负责人:
Carol A Mathews
金额:
$95.65万
依托单位国家:
美国
项目类别:
财政年份:
2018
资助国家:
美国
项目状态:
未结题
起止时间:
2018-03-15 至 2025-02-28
关键词:
Academic Medical CentersAccountingAdultAffectAmericasBiologicalBiologyCaliforniaChildChildhoodChromosomal RearrangementClinicalClinical DataClinical MarkersCodeCollaborationsComplexComputational BiologyCopy Number PolymorphismCorpus striatum structureDNADNA sequencingDataData SetDevelopmentDiseaseDisease OutcomeDisease PathwayFamilyFloridaFundingFutureGene DosageGeneral HospitalsGenesGeneticGenetic ModelsGenetic Predisposition to DiseaseGenetic RiskGenetic VariationGenotypeGilles de la Tourette syndromeGoalsHeritabilityIndividualInternationalLeadLibrariesLos AngelesMassachusettsMeasuresModelingMolecularMorbidity - disease rateNational Institute of Neurological Disorders and StrokeNeurodevelopmental DisorderOnset of illnessOutcomeParentsPathogenesisPathogenicityPhenotypePreventionRecurrenceResearchResearch PersonnelRiskSNP arraySNP genotypingSeveritiesSeverity of illnessSusceptibility GeneSymptomsTechniquesTestingUniversitiesVariantWorkbasecohortdata integrationde novo mutationdisabilityexome sequencingfunctional disabilitygene discoverygenetic architecturegenetic variantgenome wide association studygenome-widegenome-wide analysishigh riskinsightloss of functionneuropsychiatric disordernext generationnext generation sequencingnovelphenotypic datapolygenic risk scoreprecision medicinepredictive modelingprobandpsychiatric comorbidityside effectwhole genome
中文摘要
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英文摘要
Integrating Common and Rare Variation to Discover Genes Associated with Tourette Syndrome
Tourette Syndrome (TS) is a childhood-onset, neuropsychiatric disorder that is highly heritable, though
discovery of definitive TS susceptibility genes has been challenging. This multi-PD/PI application, which aims
to identify new susceptibility genes for TS and to examine their relationship to clinical disease outcomes,
continues the work of the Tourette Association of America International Consortium for Genetics (TAAICG), the
longest standing research collaborative group dedicated to understanding the genetic causes underlying TS.
The research plan consists of: 1) Whole exome sequencing of 1,400 TS parent-proband trios to identify rare,
potentially deleterious genetic variants of relevance to TS; 2) Genome-wide analyses of de novo copy-number
variation (CNVs) in these 1,400 TS trios to identify high impact, rare structural variation associated with TS;
3) Use of information about TS-relevant common variation from existing genome-wide association study
(GWAS) data on 4,819 TS cases and 9,488 controls to prioritize a subset of 800 of the 1,400 TS trios for
cryptic structural variation sequencing studies to capture de novo gene-disrupting chromosomal
rearrangements not detectable by standard techniques; and 4) Integration of identified rare and common
variation to develop prediction models of disease outcome, including tic severity, functional impairment, tic
persistence into adulthood, and psychiatric comorbidity.
The proposed study will be conducted at Massachusetts General Hospital, University of Florida, University of
California at Los Angeles, and Vanderbilt University Medical Center, each who have complementary expertise
in computational biology, analysis of next-generation sequencing data, and integration of disease-associated
DNA variation with clinical data. This proposal provides a unique and exciting opportunity to rapidly advance
the goal of identifying the biological basis of this complex and important model neuropsychiatric disorder which
in the future could lead to prediction of disease severity and to targeted treatments and/or prevention.
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Contribution of common and rare variants to bipolar disorder susceptibility in extended pedigrees from population isolates.
人群分离株的扩展谱系中常见和罕见变异对双相情感障碍易感性的贡献。
DOI:
10.1038/s41398-020-0758-1
发表时间:
2020
期刊:
Translational psychiatry
影响因子:
6.8
作者:
[Sul,JaeHoon, Service,SusanK, Huang,AldenY, Ramensky,Vasily, Hwang,Sun-Goo, Teshiba,TerriM, Park,YoungJun, Ori,AnilPS, Zhang,Zhongyang, Mullins,Niamh, OldeLoohuis,LoesM, Fears,ScottC, Araya,Carmen, Araya,Xinia, Spesny,Mitzi, Bejaran]
通讯作者:
Bejaran
De Novo Sequence and Copy Number Variants Are Strongly Associated with Tourette Disorder and Implicate Cell Polarity in Pathogenesis.
从头序列和拷贝数变体与图雷氏障碍障碍密切相关,并暗示细胞极性在发病机理中。
DOI:
10.1016/j.celrep.2018.08.082
发表时间:
2018-09-25
期刊:
Cell reports
影响因子:
8.8
作者:
[Wang S, Mandell JD, Kumar Y, Sun N, Morris MT, Arbelaez J, Nasello C, Dong S, Duhn C, Zhao X, Yang Z, Padmanabhuni SS, Yu D, King RA, Dietrich A, Khalifa N, Dahl N, Huang AY, Neale BM, Coppola G, Mathews CA, Scharf JM, Tourette International Collaborative Genetics Study (TIC Genetics), Tourette Syndrome Genetics Southern and Eastern Europe Initiative (TSGENESEE), Tourette Association of America International Consortium for Genetics (TAAICG), Fernandez TV, Buxbaum JD, De Rubeis S, Grice DE, Xing J, Heiman GA, Tischfield JA, Paschou P, Willsey AJ, State MW]
通讯作者:
State MW
xGAP: a python based efficient, modular, extensible and fault tolerant genomic analysis pipeline for variant discovery.
xGAP:一个基于 python 的高效、模块化、可扩展和容错的基因组分析管道,用于变异发现。
DOI:
10.1093/bioinformatics/btaa1097
发表时间:
2021
期刊:
Bioinformatics (Oxford, England)
影响因子:
--
作者:
[Gorla,Aditya, Jew,Brandon, Zhang,Luke, Sul,JaeHoon]
通讯作者:
Sul,JaeHoon
Rare Copy Number Variants in NRXN1 and CNTN6 Increase Risk for Tourette Syndrome.
NRXN1和CNTN6中的罕见拷贝数变体增加了Tourette综合征的风险。
DOI:
10.1016/j.neuron.2017.06.010
发表时间:
2017-06-21
期刊:
Neuron
影响因子:
16.2
作者:
[Huang AY, Yu D, Davis LK, Sul JH, Tsetsos F, Ramensky V, Zelaya I, Ramos EM, Osiecki L, Chen JA, McGrath LM, Illmann C, Sandor P, Barr CL, Grados M, Singer HS, Nöthen MM, Hebebrand J, King RA, Dion Y, Rouleau G, Budman CL, Depienne C, Worbe Y, Hartmann A, Müller-Vahl KR, Stuhrmann M, Aschauer H, Stamenkovic M, Schloegelhofer M, Konstantinidis A, Lyon GJ, McMahon WM, Barta C, Tarnok Z, Nagy P, Batterson JR, Rizzo R, Cath DC, Wolanczyk T, Berlin C, Malaty IA, Okun MS, Woods DW, Rees E, Pato CN, Pato MT, Knowles JA, Posthuma D, Pauls DL, Cox NJ, Neale BM, Freimer NB, Paschou P, Mathews CA, Scharf JM, Coppola G, Tourette Syndrome Association International Consortium for Genetics (TSAICG), Gilles de la Tourette Syndrome GWAS Replication Initiative (GGRI)]
通讯作者:
Gilles de la Tourette Syndrome GWAS Replication Initiative (GGRI)
DOI:
10.1001/jamanetworkopen.2020.27920
发表时间:
2020-12-01
期刊:
JAMA network open
影响因子:
13.8
作者:
[Goleva SB, Lake AM, Torstenson ES, Haas KF, Davis LK]
通讯作者:
Davis LK
共 6 条
Large-scale collaborative genetic and epigenetic studies of Tourette Syndrome
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批准号:9904780
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项目类别:
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资助金额:$58.32万
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财政年份:2019
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负责人:Carol A Mathews
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依托单位:
Large-Scale Collaborative Genetic and Epigenetic Studies of Tourette Syndrome
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批准号:10559565
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资助金额:$56.93万
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财政年份:2019
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负责人:Carol A Mathews
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依托单位:
Large-scale collaborative genetic and epigenetic studies of Tourette Syndrome
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批准号:10377902
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项目类别:
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资助金额:$57.27万
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资助金额:$6.82万
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财政年份:2019
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A phased clinical trial of a dietary supplement kava: biomarker changes and anxiolytic effects
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批准号:10005997
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资助金额:$37.56万
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财政年份:2019
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负责人:Carol A Mathews
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依托单位:
Integrating Common and Rare Variation to Discover Genes Associated with Tourette Syndrome
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批准号:10115141
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项目类别:
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资助金额:$169.03万
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财政年份:2018
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负责人:Carol A Mathews
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依托单位:
Refining the Tourette Syndrome phenotype across diagnoses to aid gene discovery
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批准号:9109316
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项目类别:
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资助金额:$8.33万
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财政年份:2015
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负责人:Carol A Mathews
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依托单位:
Refining the Tourette Syndrome phenotype across diagnoses to aid gene discovery
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批准号:8763948
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项目类别:
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资助金额:$32.2万
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财政年份:2013
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负责人:Carol A Mathews
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依托单位:
Refining the Tourette Syndrome phenotype across diagnoses to aid gene discovery
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批准号:8606895
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项目类别:
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资助金额:$41.32万
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财政年份:2013
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负责人:Carol A Mathews
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依托单位:
Refining the Tourette Syndrome phenotype across diagnoses to aid gene discovery
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批准号:8438183
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资助金额:$41.73万
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Identifying Intermediate Phenotypes for Compulsive Hoarding
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批准号:7990021
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资助金额:$24.4万
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依托单位:
Identifying Intermediate Phenotypes for Compulsive Hoarding
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资助金额:$19.07万
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An Affected SibPair Study of ADHD in Costa Rica
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依托单位:
An Affected SibPair Study of ADHD in Costa Rica
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批准号:6868436
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项目类别:
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资助金额:$28.81万
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财政年份:2005
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负责人:Carol A Mathews
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依托单位:
An Affected SibPair Study of ADHD in Costa Rica
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批准号:7467388
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资助金额:$28.59万
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负责人:Carol A Mathews
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依托单位:
An Affected SibPair Study of ADHD in Costa Rica
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批准号:7017071
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项目类别:
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资助金额:$7.75万
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财政年份:2005
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负责人:Carol A Mathews
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依托单位:
An Affected SibPair Study of ADHD in Costa Rica
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批准号:7559611
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资助金额:$29.45万
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An Affected SibPair Study of ADHD in Costa Rica
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资助金额:$28.59万
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负责人:Carol A Mathews
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依托单位:
MENTORED PATIENT-ORIENTED RESEARCH CAREER DEVELOPMENT AW
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批准号:6040926
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项目类别:
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资助金额:$12.15万
-
财政年份:2000
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负责人:Carol A Mathews
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依托单位:
Training the Next Generation of Mental Health Researchers
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批准号:8685322
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项目类别:
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资助金额:$26.32万
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财政年份:2000
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负责人:Carol A Mathews
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依托单位:
海外基金