Olfactory receptor mRNAs as lncRNAs that regulate genomic interactions

嗅觉受体 mRNA 作为调节基因组相互作用的 lncRNA

• 批准号: 10376032
• 负责人: Stavros Lomvardas
• 金额: $ 48.05万
• 依托单位: COLUMBIA UNIVERSITY HEALTH SCIENCES
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-04-01 至 2025-03-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10376032
• 关键词: 3-Dimensional; Adaptor Signaling Protein; Affect; Alleles; Architecture; Binding; Binding Proteins; Biochemical; Chromatin; Chromosome Structures; Code; Complex; Data; Development; Developmental Process; Enhancers; Environment; Epigenetic Process; Feedback; Gene Cluster; Gene Expression; Gene Family; Generations; Genetic; Genetic Enhancer Element; Genetic Transcription; Genomics; Greek; Human; In Situ; Island; Light; Link; Mediating; Messenger RNA; Molecular; Mus; Neurodevelopmental Disorder; Neuronal Differentiation; Nuclear; Nuclear Proteins; Olfactory Pathways; Other Genetics; Phase; Phase Transition; Process; Production; Property; Proteins; RNA; RNA-Binding Proteins; Receptor Gene; Regulation; Regulator Genes; Reporting; Repression; Role; Signal Transduction; Specificity; Structure; System; Transcriptional Regulation; Untranslated RNA; Yeasts; experimental study; gene translocation; genetic approach; genomic locus; in vivo; insight; interdisciplinary approach; nerve stem cell; novel; olfactory receptor; olfactory sensory neurons; programs; promoter; receptor expression; recruit; transcription factor

Abstract The monogenic, monoallelic, and seemingly stochastic transcriptional choice of one out of > 1000 olfactory receptor (OR) genes remained elusive for decades after the discovery of the largest mammalian gene family. However, in the past few years we obtained significant understanding on the molecular underpinnings of this enigmatic gene regulatory process. Specifically, we showed that OR gene clusters become heterochromatic at the early stages of olfactory sensory neuron (OSN) differentiation and then they aggregate in distinct nuclear compartments that assure their stable repression. As a result of this interchromosomal convergence, intergenic OR enhancers (known as Greek Islands) that are found in most OR gene clusters come in close nuclear proximity and form a multi-chromosomal super-enhancer that in each OSN associates with the transcriptionally active OR allele. The formation of the Greek Island hub is dependent upon the recruitment of the adaptor protein Ldb1, which is essential for the stable interchromosomal interactions between Greek Islands and for OR transcription. This intricate network of activating and repressive interchromosomal interactions, together with a feedback signal elicited by the expression of the chosen OR, likely generate the regulatory framework for transcriptional singularity. However, what remains unknown is the process by which an OR allele is recruited to the Greek Island hub and the mechanism that assures that only one OR allele will remain stably associated with a multi-chromosomal structure that contains numerous enhancer elements. Our preliminary data suggest that developmentally transient OR transcription and production of nascent OR mRNAs contribute to the recruitment of an OR allele to the Greek Island hub and to OR gene choice. Thus, we propose genetic experiments that will determine which sequences of the sense OR mRNA are required and sufficient for recruitment of trans OR enhancers, what proteins recognized the nascent OR mRNA and what contribution these proteins have to the assembly of a multi-enhancer/OR complex. These experiments not only will shed light to the enigmatic process of OR gene choice, but will also provide general molecular principles for the mechanisms that mediate genomic compartmentalization during cellular differentiation.

摘要 > 1000个嗅觉基因中的一个的单基因、单等位基因和看似随机的转录选择 在发现最大的哺乳动物基因家族后的几十年里，受体（OR）基因仍然难以捉摸。 然而，在过去的几年里，我们对这一分子基础有了重要的了解。 神秘的基因调节过程。具体地说，我们发现OR基因簇在2000 - 2005年成为异染色质。 嗅感觉神经元（OSN）分化的早期阶段，然后它们聚集在不同的核 确保其稳定抑制的隔室。由于这种染色体间的聚合，基因间 在大多数OR基因簇中发现的OR增强子（称为希腊岛）与细胞核紧密相连， 邻近并形成多染色体超级增强子，其在每个OSN中与转录相关。 活动OR等位基因。希腊岛枢纽的形成取决于适配器的招募 蛋白Ldb 1，这是必不可少的稳定染色体间的相互作用，希腊群岛和 或转录。这种复杂的激活和抑制染色体间相互作用的网络， 通过选择OR的表达引发的反馈信号，可能产生调节框架 转录奇异性。然而，仍不清楚的是OR等位基因是通过什么过程被激活的。 招募到希腊岛枢纽和机制，确保只有一个OR等位基因将保持稳定 与包含许多增强子元件的多染色体结构相关。我们的初步 数据表明，发育中短暂的OR转录和新生OR mRNA的产生有助于 到希腊岛枢纽的OR等位基因的招募和OR基因的选择。因此，我们建议遗传 这些实验将确定正义OR mRNA的哪些序列是必需的，并且足以 招募反式OR增强子，哪些蛋白质识别新生OR mRNA， 这些蛋白质必须组装多增强子/OR复合物。这些实验不仅会 光或基因选择的神秘过程，但也将提供一般的分子原理， 在细胞分化过程中介导基因组区室化的机制。