Investigation of the design, structure and mechanism of Mena protein interaction inhibitors

Mena蛋白相互作用抑制剂的设计、结构和机制研究

• 批准号: 10408668
• 负责人: Jackson Halpin
• 金额: $ 6.98万
• 依托单位: MASSACHUSETTS INSTITUTE OF TECHNOLOGY
• 依托单位国家: 美国
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-06-01 至 2023-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10408668
• 关键词: Actins; Affinity; Behavior; Binding; Biological Assay; Biology; Biophysics; Blood Circulation; Body part; C-terminal; Cancer Patient; Cell Culture Techniques; Cells; Cessation of life; Characteristics; Collaborations; Communication; Complex; Computer Models; Crystallography; Data; Development; Distal; Distant; Educational process of instructing; Engineering; Environment; Epitopes; Evaluation; Family; Goals; Hand; Human; Institutes; Invaded; Investigation; Laboratories; Lead; Libraries; Link; Malignant Neoplasms; Mammalian Cell; Mediating; Mentors; Metastatic to; Methods; Modeling; Modernization; Molecular; Mutation; Neoplasm Metastasis; Pathway interactions; Peptides; Permeability; Primary Neoplasm; Process; Proline; Property; Protein Engineering; Protein Family; Protein Isoforms; Proteins; Proteome; RNA Splicing; Regulation; Regulator Genes; Research; Research Methodology; Research Training; Role; Site; Specificity; Structure; Techniques; Testing; Therapeutic; Tissues; Training; Transfection; Travel; Variant; X-Ray Crystallography; anticancer research; base; biophysical techniques; cancer cell; cancer invasiveness; cell motility; design; experimental study; genetic regulatory protein; high throughput screening; inhibitor; insight; knock-down; member; metastatic process; neoplastic cell; overexpression; paralogous gene; preference; protein function; protein protein interaction; responsible research conduct; scaffold; screening; skills; small molecule inhibitor; therapeutic evaluation; tool; tumor; vasodilator-stimulated phosphoprotein

Project Summary/Abstract Cancer metastasis depends on coordinated cytoskeletal processes induced by a characteristic change in expression of specific motility and actin-regulatory genes. Mena, a member of the Ena/VASP family of actin regulatory proteins, is highly upregulated in invasive cancer cells. The Ena/VASP proteins localize to actin-based assemblies via their structurally similar EVH1 domains which bind to short linear motifs (SLMs) in other proteins. Mena is integral to motility pathways that are characteristic of invasive cancer cells. An invasion-associated splice variant of Mena, MenaINV, has far more potent effects on metastasis than Mena and is preferentially expressed in invasive cancer cells. However, determination of the precise mechanistic roles of Mena and MenaINV in metastatic processes has proven challenging. There is currently no molecular explanation for differences in the protein-protein interaction properties of Mena and its paralogs/isoforms. Designed peptide/mini-protein binders can reveal molecular determinants of binding specificity and inspire/inform the design of lead inhibitors. They can also be used to probe the function of proteins in their cellular context and with temporal control, providing a direct evaluation of therapeutic potential. The primary goal of this proposal is to uncover the molecular basis for differences in the protein-interaction properties of Mena and MenaINV, determine the molecular origin of the binding specificity of an existing mini-protein inhibitor, and use this information to design and test paralog- and isoform- selective, cell-permeable mini-protein inhibitors of Mena. This goal will be accomplished by applying an array of biophysical experiments such as NMR, SAXS, X-ray crystallography and binding assays to uncover the molecular origin of protein-interaction differences between Mena and its paralogs/isoforms. These experiments will reveal molecular determinants of inhibitor binding specificity and contribute to our understanding of metastasis by providing a molecular explanation for differences between Mena and MenaINV. The biophysical information gained from these experiments will then be incorporated into the design of paralog- and isoform- specific mini-protein inhibitors using cutting-edge protein design methods, including structure-based computation, focused library design, and high throughput screening techniques. In addition to training in a variety of new research methods, the training plan outlined here includes extensive development of scientific communication, responsible conduct of research, scientific networking, teaching, mentoring and management skills. The research and training will take place in the laboratory of Dr. Amy Keating, a highly interdisciplinary and collaborative group at the forefront of the protein-protein interaction and protein design fields. The Keating lab is embedded in the MIT Biology department and part of the Koch Institute for Integrative Cancer Research, providing an ideal environment for training, collaboration, and research.

项目总结/摘要 肿瘤转移依赖于细胞骨架的协调过程，这些过程是由细胞骨架的特征性变化引起的。 特异性运动和肌动蛋白调节基因的表达。Mena，肌动蛋白Ena/VASP家族的成员 调节蛋白，在侵袭性癌细胞中高度上调。Ena/VASP蛋白定位于基于肌动蛋白的 EVH 1结构域与其他蛋白质中的短线性基序（SLM）结合。 Mena是侵袭性癌细胞特有的运动途径的组成部分。与入侵有关的 Mena剪接变体MenaINV对转移具有比Mena强得多的作用，并优先被 在侵袭性癌细胞中表达。然而，确定Mena的确切机制作用， 事实证明，MenaINV在转移过程中具有挑战性。目前还没有分子学解释， Mena及其旁系同源物/同种型的蛋白质-蛋白质相互作用性质的差异。设计 肽/微蛋白结合剂可以揭示结合特异性的分子决定因素，并启发/告知 铅抑制剂的设计。它们也可用于探测蛋白质在其细胞环境中的功能， 时间控制，提供治疗潜力的直接评估。该提案的主要目标是 揭示Mena和MenaINV蛋白质相互作用特性差异的分子基础， 确定现有微小蛋白抑制剂的结合特异性的分子来源，以及应用 这些信息设计和测试特异性和亚型选择性的、细胞可渗透的小蛋白抑制剂， 的MENA。这一目标将通过应用一系列生物物理实验来实现，如NMR，SAXS， X射线晶体学和结合分析揭示蛋白质相互作用差异的分子起源 Mena及其旁系同源物/同种型之间的关系。这些实验将揭示抑制剂的分子决定因素 结合特异性，并有助于我们理解转移，提供分子解释， MENA和MENAINV的区别从这些实验中获得的生物物理信息将被 使用尖端蛋白质，将其纳入副产物和亚型特异性微型蛋白质抑制剂的设计中， 设计方法，包括基于结构的计算、聚焦文库设计和高通量筛选 技术.除了各种新的研究方法的培训外，这里概述的培训计划还包括 广泛开展科学交流，负责任地开展研究，建立科学网络， 教学、指导和管理技能。研究和培训将在博士的实验室进行。 艾米基廷，一个高度跨学科和协作组在蛋白质-蛋白质相互作用的前沿 和蛋白质设计领域。基廷实验室是嵌入在麻省理工学院生物系和科赫的一部分， 癌症综合研究所，为培训，合作和研究提供了理想的环境。