Enhanced MDx: a computational model to optimize pre-analytical pathogen isolation from whole blood

增强型 MDx：优化全血分析前病原体分离的计算模型

• 批准号: 10484641
• 负责人: Cass T Miller
• 金额: $ 99.97万
• 依托单位: REDBUD LABS, INC.
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-09-10 至 2024-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10484641
• 关键词: 2019-nCoV; Adhesions; Affinity; Agreement; Area; Binding Sites; Biological; Biological Assay; Cancer Detection; Cardiovascular system; Characteristics; Communities; Complex; Computer Models; Custom; Data; Device or Instrument Development; Devices; Diffusion; Environment; Future; Goals; HIV; Liquid substance; Magnetism; Methods; Microfluidic Microchips; Microfluidics; Modeling; North Carolina; Nucleic Acids; Output; Performance; Phase; Physics; Plasma; Preparation; Probability; Research; Running; Saliva; Sampling; Sepsis; Side; Solid; Specimen; Structure; Surface; System; Technology; Thermodynamics; Universities; Water; Whole Blood; base; biological systems; design; detection limit; diagnostic assay; diagnostic technologies; improved; in silico; liquid biopsy; magnetic beads; models and simulation; molecular diagnostics; pathogen; phase 2 study; point-of-care diagnostics; scale up; simulation; success; theories; tool

ABSTRACT Microscale simulations have been applied to a number of complex microfluidic systems and biological applications, but existing methods are limited in the scale and scope of problems that are addressable. Thermodynamically constrained averaging theory (TCAT) is an established approach that can be used to formulate customized macroscale models that are consistent with microscale physics and thermodynamics. TCAT modeling frameworks have been developed, evaluated, and validated for a wide range of applications involving fluid and solid phases, and in Phase I of this project, Redbud Labs’ actuatable post technology enabling rapid target isolation and concentration was successfully modeled by the Griffith and Miller Labs at the University of North Carolina at Chapel Hill at both the micro and macroscale. This will enable future in silico optimization of these microfluidic systems for use in Point of Care Diagnostic (POC Dx) In this Phase II study, we will expand upon the models developed in Phase I to include scenarios relevant to a broad group of molecular diagnostics, including those where off target species are plentiful and target species are exceedingly rare. In addition, Phase II models will include relevant biological matrices such as whole blood, plasma, and saliva. The developed computational model will then be used to optimize high-impact purification/diagnostic assays for HIV, SARS-CoV-2, cancer detection (liquid biopsy), and sepsis. Finally, the optimized components will be ported to Redbud Labs’ existing sample prep platform, NAxtract, and made available for research use only applications.

抽象的 微观模拟已应用于许多复杂的微流体系统和生物学 应用程序，但现有方法的限制是可解决问题的问题的规模和范围。 热力学约束平均理论（TCAT）是一种已建立的方法，可用于 与微观物理学和热力学一致的形式定制的宏观模型。 TCAT建模框架已经开发，评估和验证 涉及流体和实心阶段，以及在该项目的第一阶段，Redbud Labs的可行技术 通过格里菲斯和米勒实验室成功建模了启用快速目标隔离和浓度 北卡罗来纳大学的小教堂山，位于微观和麦克罗斯卡尔大学。这将使未来 这些微流体系统用于护理诊断（POC DX）的计算机优化 在这一第二阶段的研究中，我们将扩展I阶段中开发的模型，以包括相关的方案 到一组广泛的分子诊断，包括靶物种丰富和靶标的分子诊断。 物种极为罕见。此外，第二阶段模型将包括相关的生物矩阵，例如整体 血液，血浆和唾液。然后，开发的计算模型将用于优化高影响力 HIV，SARS-COV-2，癌症检测（液体活检）和败血症的纯化/诊断测定法。最后， 优化的组件将移植到Redbud Labs现有的样本准备平台，Naxtract，并制造 可用于研究仅使用应用程序。