Cell-free assay technologies for the identification of active compounds

用于鉴定活性化合物的无细胞测定技术

• 批准号: 10486860
• 负责人: Barry Okeefe
• 金额: $ 58.58万
• 依托单位: DIVISION OF BASIC SCIENCES - NCI
• 依托单位国家: 美国
• 资助国家: 美国
• 起止时间: 至
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10486860
• 关键词: 2019-nCoV; Biochemical; Biological Assay; Biophysics; Cells; Chemicals; Cyclic Peptides; Development; Diagnostic; Enzymes; GPC3 gene; Genes; HIV-1; Immune; Immunologics; Inositol; Manuscripts; Metabolic; Methods; Modification; Natural Products; Natural Products Chemistry; Paper; Phosphodiesterase Inhibitors; Phosphotransferases; Preparation; Primary carcinoma of the liver cells; Process; Productivity; Protease Inhibitor; Proteins; Publishing; RNA; Reporting; Role; Sampling; Source; Techniques; Technology; Viral; Work; assay development; inhibitor/antagonist; interest; phosphoric diester hydrolase; receptor binding; scaffold; screening; small molecule; tripolyphosphate; ubiquitin ligase

The PCMBS collaborates closely with the MTP Assay Development and Screening Section (ADSS/Henrich) to automate, validate complete screens, with the Chemical Diversity Development Section (CDDS/Beutler) to access new sources of chemical diversity and with the Natural Products Chemistry Section (NPCS/Grkovic) to prioritize extracts for natural product isolation and biochemically evaluate pure active compounds isolated by NPCS/Grkovic or CDDS/Beutler. Examples of PCMBS efforts during this review period, include published papers on screens of natural product for selective inhibitors of the protease MALT15 , the ubiquitin ligase CBLB8,11,13,14, and the phosphodiesterase Tdp13. Our studies on natural product inhibitors of TDP1 also resulted in a second paper describing a new class of cyclic peptides which are the first reported allosteric inhibitors of this phosphodiesterase. We have recently also completed a screen for inhibitors of the phosphodiesterase TDP2 with a manuscript in preparation. In addition, the PCMBS has continued to increase utility of biophysical screening methods for the identification of specific modulators of the thermal stability of both protein and RNA motifs. Initially, this work resulted in the identification of a new small molecule scaffold that altered the stability of HIV-1 TAR RNA. This technology has now been expanded upon to allow for the facile screening of pure compounds and natural product samples in a high throughput format to identify modulators of RNA and protein stability. One recently published example was the identification of a natural product that selectively modulated the thermal stability of pre-miR-216. We currently have two new other enzymatic screens in progress, against the chimeric kinase DNAJ/PKAC and inositol 1,3,4-triphosphate 5/6 kinase (ITPK1), as well as three new biophysical screens; against the immunologically-pertinent metabolic enzyme Immune Responsive Gene 1 (IRG1), the diagnostic target for hepatocellular carcinoma glypican-3 (GPC-3)and the SARS-CoV-2 receptor binding domain (RBD). The PCMBS also evaluates compounds, derived from MTP screens, for their specific interactions against macromolecular targets. We have used both biophysical and biochemical techniques to evaluate inhibitors of pre-miR-21 RNA6, Tdp13,9, MALT15, and SARS-CoV-2 viral entry.

PCMBS与MTP分析开发和筛选部门（ADSS/Henrich）密切合作，以自动化验证完整的筛选，与化学多样性开发部门（CDDS/Beutler）密切合作，以获取化学多样性的新来源，并与天然产物化学部门（NPCS/Grkovic）优先考虑天然产物分离的提取物，并对NPCS/Grkovic或CDDS/Beutler分离的纯活性化合物进行生化评估。在本综述期间，PCMBS工作的例子包括发表的筛选蛋白酶MALT15、泛素连接酶CBLB8、11、13、14和磷酸二酯酶Tdp13选择性抑制剂的天然产物的论文。我们对TDP1天然产物抑制剂的研究也导致了第二篇论文，描述了一类新的环状肽，这是首次报道的这种磷酸二酯酶的变构抑制剂。我们最近还完成了对磷酸二酯酶TDP2抑制剂的筛选，并准备了一份手稿。此外，PCMBS继续增加生物物理筛选方法的实用性，用于鉴定蛋白质和RNA基序的热稳定性的特定调节剂。最初，这项工作导致鉴定出一种新的小分子支架，改变了HIV-1 TAR RNA的稳定性。这项技术现在已经扩展到允许在高通量格式中轻松筛选纯化合物和天然产物样品，以鉴定RNA和蛋白质稳定性的调节剂。最近发表的一个例子是鉴定了一种可以选择性地调节pre-miR-216热稳定性的天然产物。我们目前有两个新的酶筛选正在进行中，针对嵌合激酶DNAJ/PKAC和肌醇1,3,4-三磷酸5/6激酶（ITPK1），以及三个新的生物物理筛选；免疫相关代谢酶免疫应答基因1 (IRG1)，肝细胞癌的诊断靶点glypican-3 （GPC-3）和SARS-CoV-2受体结合域（RBD）。PCMBS还评估从MTP筛选中获得的化合物对大分子靶标的特异性相互作用。我们使用生物物理和生化技术来评估pre-miR-21 RNA6、Tdp13、9、MALT15和SARS-CoV-2病毒进入的抑制剂。