Impact of Spatial Location and Movement Patterns on Tuberculosis Transmission in Urban Uganda

空间位置和运动模式对乌干达城市结核病传播的影响

• 批准号: 10510495
• 负责人: Katherine Olga Robsky
• 金额: $ 5.14万
• 依托单位: JOHNS HOPKINS UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-06-01 至 2023-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10510495
• 关键词: Accounting; Adult; Affect; Age; Area; Code; Communities; Data; Development; Diagnosis; Disease; Enrollment; Euclidean Space; Event; Fellowship; Frequencies; Geography; Goals; Grant; Habits; Health; Health care facility; Heterogeneity; Household; Human; Incidence; Individual; Intervention; Investigation; Learning; Link; Location; Logistic Regressions; Measurement; Measures; Mentors; Methods; Modernization; Morbidity - disease rate; Movement; Mycobacterium tuberculosis; Odds Ratio; Participant; Pattern; Peer Review; Persons; Play; Populations at Risk; Preventive therapy; Probability; Radial; Rapid diagnostics; Reading; Relative Risks; Research; Research Personnel; Review Literature; Risk; Risk Factors; Role; Specific qualifier value; Specimen; Testing; Training; Travel; Tuberculosis; Uganda; Woman; Work; World Health Organization; base; biological sex; case finding; effective intervention; effective therapy; epidemiology study; genome sequencing; genomic data; improved; indexing; men; migration; mortality; novel; pathogen; population based; practical application; prevent; residence; screening; sex; skills; social epidemiology; social health determinants; spatial epidemiology; systematic review; transmission process; tuberculosis diagnostics; tuberculosis treatment; urban setting; whole genome

PROJECT SUMMARY Tuberculosis (TB) is the leading cause of mortality by a single pathogen worldwide. Despite developments in TB diagnostics and treatment, TB incidence declines 2% annually, well below the rate needed to achieve the World Health Organization's End TB Goals. A better understanding of populations at risk for acquiring and transmitting TB is critical to targeting interventions for greatest impact. Location and movement patterns may play a key role in TB transmission; where people live as well as their travel habits influence their patterns of contact with others. Research to date has not integrated advanced spatial methods and measurement of geographic mobility to develop a comprehensive understanding of the relationship between spatial and mobility patterns and TB transmission. This proposal is nested within an existing study entitled, “A Comprehensive Snapshot of Tuberculosis Transmission in an Urban Ugandan Community” (STOMP-TB; R01HL138728, PI: Dowdy) being conducted in Kampala, Uganda. The STOMP-TB study enrolls adults (age≥15) diagnosed with TB at 4 health facilities and conducts active case finding in two waves in which all adults within the study area are eligible for TB testing. Specimens from all participants with positive cultures for M. tuberculosis are submitted for whole genome sequencing (WGS), providing data on transmission networks. This proposal consists of two Specific Aims, each with three sub-aims, and each with an associated Training Aim. In Aim 1 (spatial analysis of TB risk), I will quantify the association of residential location with TB transmission as a function of Euclidean distance, estimate the association between administrative zone of residence and TB transmission, and evaluate the potential impact of TB contact investigation based on a defined radius from an index case. My associated Training Aim 1 is to learn and apply advanced methods for spatial analysis and includes participation in short-course training on spatial analysis, participation in a spatial analysis workgroup, and practice in application of R code for spatial analysis with one of my mentors. In Aim 2 (assessment of geographic mobility and TB risk), I will conduct a systematic review to summarize existing methods of measuring mobility, estimate the association between mobility and TB transmission, and assess the role of biological sex as a modifier of the effect of mobility on TB disease. My associated Training Aim 2 is to learn to apply a social determinants of health framework to risk factors for TB, including mobility, through coursework on social epidemiology and causal inference and discussion of specified readings on this topic with one of mentors. My Training Aim 3 is to improve my scientific skills; the main activity is participating in grant development seminars and developing a K01 or equivalent application by the end of this fellowship. The successful completion of these aims will facilitate my progress toward becoming an independent researcher with unique expertise in the application of spatial epidemiology and geographic mobility measurement to improve our understanding of TB transmission in high-burden settings.

项目摘要 结核病（TB）是全球单一病原体导致死亡的主要原因。尽管发展， 在结核病诊断和治疗方面，结核病发病率每年下降2%，远低于实现 世界卫生组织的终结结核病目标。更好地了解有可能感染艾滋病毒的人群， 传播结核病是使干预措施产生最大影响的关键。位置和移动模式可以 在结核病传播中发挥关键作用;人们居住的地方以及他们的旅行习惯影响他们的结核病传播模式。 与他人接触。迄今为止的研究还没有整合先进的空间方法和测量， 地理流动性，以全面了解空间之间的关系， 以及移动性模式和TB传输。这一建议被纳入一项题为“A 乌干达城市社区结核病传播的综合概况”（STOMP-TB; R 01 HL 138728，PI：Dowdy）在乌干达坎帕拉进行。STOMP-TB研究招募了成年人 (age≥15岁）在4个卫生设施被诊断为结核病，并分两波进行积极的病例发现， 研究区域内的成年人有资格接受结核病检测。所有受试者的标本均具有阳性培养物， M.提交结核病的全基因组测序（WGS），提供关于传播网络的数据。 本建议书由两个具体目标组成，每个具体目标有三个子目标，每个子目标有一个相关的培训 瞄准在目标1（结核病风险的空间分析）中，我将量化居住地点与结核病的关联 传输作为欧几里得距离的函数，估计行政区域之间的关联 居住地和结核病传播，并评估结核病接触调查的潜在影响， 从索引情况定义半径。我的相关培训目标1是学习和应用先进的方法， 空间分析，包括参加关于空间分析的短期课程培训，参加空间 分析程序，并与我的一位导师一起实践R代码在空间分析中的应用。在目标2中 （地理流动性和结核病风险评估），我将进行系统性审查， 测量移动性的方法，估计移动性和TB传输之间的关联，并评估 生物性别作为结核病活动性影响的调节剂的作用。我的相关培训目标2是 学习将健康框架的社会决定因素应用于结核病风险因素，包括流动性， 社会流行病学和因果推理的课程作业，并讨论关于这一主题的指定阅读材料， 导师之一。我的培训目标3是提高我的科学技能;主要活动是参加 资助发展研讨会，并在本奖学金结束前开发K 01或同等应用程序。 这些目标的成功完成将有助于我成为一个独立的人。 在空间流行病学和地理流动性应用方面具有独特专长的研究人员 我们需要通过测量来提高我们对高负担环境中结核病传播的认识。

项目成果

Ending tuberculosis in a post-COVID-19 world: a person-centred, equity-oriented approach.

• DOI: 10.1016/s1473-3099(22)00500-x
• 发表时间: 2023-03
• 期刊: LANCET INFECTIOUS DISEASES
• 影响因子: 56.3
• 作者: Ryckman, Theresa;Robsky, Katherine;Cilloni, Lucia;Zawedde-Muyanja, Stella;Ananthakrishnan, Ramya;Kendall, Emily A;Shrestha, Sourya;Turyahabwe, Stavia;Katamba, Achilles;Dowdy, David W
• 通讯作者: Dowdy, David W

Number needed to screen for TB in clinical, structural or occupational risk groups.

• DOI: 10.5588/ijtld.21.0749
• 发表时间: 2022-06-01
• 期刊: INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE
• 影响因子: 4
• 作者: Naufal, F.;Chaisson, L. H.;Robsky, K. O.;Delgado-Barroso, P.;Alvarez-Manzo, H. S.;Miller, C. R.;Shapiro, A. E.;Golub, J. E.
• 通讯作者: Golub, J. E.

Methods for measuring short-term geographical mobility used in infectious disease research: a scoping review protocol.

• DOI: 10.1136/bmjopen-2023-072439
• 发表时间: 2023-10-04
• 期刊: BMJ OPEN
• 影响因子: 2.9
• 作者: Robsky, Katherine O.;Tram, Khai Hoan;Dowdy, David W.;Zelner, Jon
• 通讯作者: Zelner, Jon