Functional Consequences Of The Plant Epitranscriptome

植物表观转录组的功能后果

• 批准号: BB/S006478/1
• 负责人: Rupert Fray
• 金额: $ 64.72万
• 依托单位: University of Nottingham
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2019
• 资助国家: 英国
• 起止时间: 2019 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=BB%2FS006478%2F1
• 关键词: Functional; Consequences; Plant; Epitranscriptome

DNA is comprised of long chains of "bases" of four different types: A, C, G and T. The information content of DNA resides primarily in the order in which these occur along its length. The genetic code is copied into a related molecule called RNA that is the messenger of this code. This messenger RNA (mRNA) moves out from the cell nucleus and is used by cellular machinery called ribosomes as a template on which to build proteins. RNA is comprised of almost the same bases, A, C, and G, but U replaces T. After a gene has been copied into mRNA, specific changes can be made to the bases of the mRNA itself. The most common modification within mRNA of both plants and animals is the addition of a small chemical "tag" to adenosines to make m6A in a process referred to as methylation. The frequency of m6A in mRNA is about 0.1-0.2%. This would correspond to an average of roughly once or twice per typical message, but we know that some messages contain several m6A sites whilst others contain none. The presence of the m6A "tag" does not change which amino acids are incorporated during translation and its function remained a mystery for more than 30 years. Ten years ago we showed that this modification was needed for normal developmental programmes in plants and yeast and other groups subsequently showed that this was also the case in animals. The reason for this is that the presence of m6A can affect how a mRNA is processed, when it is degraded and how many times it is used as a template for protein synthesis. However, the mechanisms by which m6A achieves this are still poorly understood.The methylation process is itself dynamic. The human fat mass and obesity associated gene, FTO, has been shown to encode a protein that can remove the "tag" and convert m6A back to A. FTO is linked to several serious human diseases, so understanding the function of m6A at a molecular level has become important for drug companies and researchers worldwide. Using plants as a model system, we have identified the group of enzymes that act together to put the "tag" on the mRNA and we have shown that the tag is usually placed near the end of mRNA. These enzymes and features of mRNA methylation were subsequently found to be highly conserved between plants and animals. Thus, experiments in plants that are much simpler to perform than in mammals can reveal fundamental principles that are likely to operate in humans also.Plants that we have engineered to have low levels of m6A are small, weak and have specific developmental defects. By randomly mutating thousands of seeds from these plants, we found some plants that grew normally, even though they still had very low m6A levels. One of the mutations that restores normal growth is in a gene that encodes a protein that forms part of the ribosome. This ribosomal protein is needed to restart or continue translation of mRNAs with certain structures, both in plants and in some human viruses. The aim of this project is to understand the way in which m6A regulates how some mRNAs are translated by ribosomes. This is important because it is likely a conserved process that underlies m6A function in human processes too. We will also identify the mutations in other genes that allow our low m6A plants to grow normally, we anticipate that similar gene functions will also be present in human and that insights gained from our plant model system will continue to inform the research field.

DNA是由四种不同类型的“碱基”组成的长链：A、C、G和T。DNA的信息内容主要存在于这些信息沿其长度沿着出现的顺序中。遗传密码被复制到一种称为RNA的相关分子中，RNA是该密码的信使。这种信使RNA（mRNA）从细胞核中移出，并被称为核糖体的细胞机器用作构建蛋白质的模板。RNA由几乎相同的碱基A、C和G组成，但U取代了T。当一个基因被复制到mRNA中后，mRNA本身的碱基就可以发生特定的变化。在植物和动物的mRNA中最常见的修饰是在腺苷上添加一个小的化学“标签”，以在称为甲基化的过程中制造m6 A。m6 A在mRNA中的频率约为0.1- 0.2%。这相当于平均每个典型消息大约一次或两次，但我们知道有些消息包含几个m6 A站点，而其他消息则不包含。m6 A“标签”的存在并没有改变翻译过程中掺入的氨基酸，其功能在30多年来一直是个谜。十年前，我们发现这种修饰是植物和酵母正常发育所必需的，随后其他研究小组也发现动物也是如此。其原因是m6 A的存在可以影响mRNA的加工方式，何时降解以及它作为蛋白质合成模板的次数。然而，m6 A实现这一目标的机制仍然知之甚少。甲基化过程本身是动态的。人类脂肪量和肥胖相关基因FTO已被证明编码一种蛋白质，可以去除“标签”并将m6 A转化回A。FTO与几种严重的人类疾病有关，因此在分子水平上了解m6 A的功能对于全球制药公司和研究人员来说非常重要。使用植物作为模型系统，我们已经确定了一组酶，它们共同作用，将“标签”放在mRNA上，我们已经表明标签通常位于mRNA的末端附近。随后发现这些酶和mRNA甲基化的特征在植物和动物之间高度保守。因此，在植物中进行的实验比在哺乳动物中进行的实验简单得多，可以揭示可能在人类中也起作用的基本原理。我们设计的m6 A水平较低的植物体积小，身体虚弱，有特定的发育缺陷。通过随机突变这些植物的数千粒种子，我们发现一些植物生长正常，尽管它们的m6 A水平仍然很低。恢复正常生长的突变之一是编码构成核糖体一部分的蛋白质的基因。这种核糖体蛋白需要重新启动或继续翻译具有某些结构的mRNA，无论是在植物还是在一些人类病毒中。该项目的目的是了解m6 A调节核糖体翻译某些mRNA的方式。这很重要，因为它可能是一个保守的过程，也是m6 A在人类过程中功能的基础。我们还将确定其他基因中的突变，使我们的低m6 A植物正常生长，我们预计类似的基因功能也将存在于人类中，从我们的植物模型系统中获得的见解将继续为研究领域提供信息。

项目成果

CMTr cap-adjacent 2'-O-ribose mRNA methyltransferases are required for reward learning and mRNA localization to synapses.

• DOI: 10.1038/s41467-022-28549-5
• 发表时间: 2022-03-08
• 期刊: Nature communications
• 影响因子: 16.6
• 作者: Haussmann IU;Wu Y;Nallasivan MP;Archer N;Bodi Z;Hebenstreit D;Waddell S;Fray R;Soller M
• 通讯作者: Soller M

Interplay between m6A modification and overall transcripts quantity: Impacts on mRNA composition in plant stress granules

• DOI: 10.1101/2023.12.14.569339
• 发表时间: 2023-12
• 期刊: bioRxiv
• 作者: D. Kubiak;M. Szcześniak;Karolina Ostrowska;D. Bielewicz;S. S. Bhat-S.;K. Niedojadło;Z. Szweykowska-Kulińska;A. Jarmolowski;R. Fray;J. Niedojadlo

CMTr cap-adjacent 2'- O -ribose mRNA methyltransferases are required for reward learning and mRNA localization to synapses

CMTr 帽相邻的 2-O-核糖 mRNA 甲基转移酶是奖励学习和 mRNA 定位到突触所必需的

• DOI: 10.1101/2021.06.24.449724
• 发表时间: 2021
• 作者: Haussmann I