Defining the impact of secondary mutations in CEBPA-mutated acute myeloid leukaemia.

定义二次突变对 CEBPA 突变的急性髓系白血病的影响。

• 批准号: MR/M018830/1
• 负责人: Catherine Hockings
• 金额: $ 36.3万
• 依托单位: University College London
• 依托单位国家: 英国
• 项目类别: Fellowship
• 财政年份: 2015
• 资助国家: 英国
• 起止时间: 2015 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=MR%2FM018830%2F1
• 关键词: Defining; impact; secondary; mutations; CEBPA

Acute myeloid leukaemia (AML) is a blood cancer that affects 3,000 people each year in the UK. Current treatment is with intensive chemotherapy, which can result in prolonged hospital admissions for many months. At diagnosis, information regarding the genetics of each patient's leukaemia is sought. This information is mainly used to weigh up the risk of a patient's leukaemia relapsing against the risks of a bone marrow transplant. However, further understanding of how these genetic changes disrupt the normal functioning of blood cells can help us develop new more targeted treatments. In turn this may improve outcomes in all patients - particularly for those who are unfit for intensive chemotherapy or who relapse following treatment.AML develops from a normal blood stem cell that has acquired successive genetic abnormalities eventually leading to the development of leukaemia. Next generation sequencing (NGS) is an approach that allows us to look at the genetics of the leukaemia in minute detail. NGS has identified more than 250 genetic abnormalities in AML that are observed in more than one individual. To develop leukaemia, each patient seems to need between 5-20 of these mutations. The genes involved vary in their frequency, with only 5 genes found to be mutated in >10% of sporadic AML cases (Kihara et al 2014). One of these genes is called CEBPA. Although most commonly the changes in CEBPA occur after birth to an individual blood stem cell, in a small number of individuals CEBPA mutations can be inherited. This means the genetic error in CEBPA is in all cells and leads to a predisposition to the development of leukaemia. Patients who develop AML that have inherited CEBPA mutations are unique because we can be certain what was the first genetic event in the development of leukaemia. This is important because the first genetic event may be the trigger of all the subsequent changes.Studies have shown that a gene commonly mutated along with CEBPA is the TET2 gene. In this project we will be investigating the effects of the combination of CEBPA and TET2 mutations on normal blood development and the development of leukaemia. The zebrafish is a highly versatile fresh water fish. It is extremely useful for rapid assessment of the effect of multiple genetic abnormalities. This is because it is small, totally transparent and produces many hundreds of offspring each week. Blood develops within the first 5 days of life making it very quick and easy to perform our experiments. Our laboratory has used the zebrafish to investigate how specific genetic mutations lead to clinical syndromes of bone marrow failure and acute leukaemia. We will use the zebrafish to define the combined effects of tet2 and cebpa.In a third of CEBPA mutated AML patients the additional mutations that lead to the development of leukaemia are unknown. Our project will also investigate which other genes might be important in the development of CEBPA mutated AML. We will do this by a systematic review of already published data on DNA sequencing in sporadic AML and work performed by our collaborators at Barts Cancer Institute on 8 patients with familial CEBPA mutated AML. However, only 17 cases of CEBPA have been fully DNA sequenced to date. We have a large cohort of over 100 patient samples, on which we will collect further information on the mutational landscape of AML by NGS. This will be performed in parallel with our studies on the cebpa/tet2 mutated zebrafish. The intention of these sequencing studies will be both to comprehensively identify which genes are recurrently mutated in CEBPA mutated AML and correlate this to clinical outcomes of patients, and to use this information to move forward to functional assessment in our zebrafish cebpa model.

急性髓性白血病（AML）是一种血液癌症，每年在英国影响3,000人。目前的治疗是强化化疗，这可能导致住院时间延长数月。在诊断时，需要了解每个患者白血病的遗传学信息。这些信息主要用于衡量患者白血病复发的风险与骨髓移植的风险。然而，进一步了解这些遗传变化如何破坏血细胞的正常功能可以帮助我们开发新的更具针对性的治疗方法。反过来，这可能会改善所有患者的预后，特别是那些不适合接受强化化疗或治疗后复发的患者。AML由正常的造血干细胞发展而来，这些造血干细胞获得了连续的遗传异常，最终导致白血病的发展。下一代测序（NGS）是一种允许我们详细了解白血病遗传学的方法。NGS已经确定了超过250种在不止一个个体中观察到的AML遗传异常。要发展成白血病，每个患者似乎需要5-20个这样的突变。所涉及的基因的频率各不相同，在>10%的散发性AML病例中仅发现5个基因突变（Kihara et al 2014）。其中一个基因叫做CEBPA。虽然CEBPA的变化通常发生在出生后的个体造血干细胞中，但在少数个体中，CEBPA突变可以遗传。这意味着CEBPA中的遗传错误存在于所有细胞中，并导致白血病的发生。患有遗传CEBPA突变的AML的患者是独特的，因为我们可以确定白血病发展中的第一个遗传事件是什么。这一点很重要，因为第一个遗传事件可能是所有后续变化的触发因素。研究表明，TET 2基因通常与CEBPA一起沿着突变。在这个项目中，我们将研究CEBPA和TET 2突变的组合对正常血液发育和白血病发展的影响。斑马鱼是一种用途广泛的淡水鱼。它对于快速评估多种遗传异常的影响非常有用。这是因为它很小，完全透明，每周产生数百个后代。血液在生命的前5天内发育，这使得我们的实验非常快速和容易。我们的实验室使用斑马鱼来研究特定的基因突变如何导致骨髓衰竭和急性白血病的临床综合征。我们将使用斑马鱼来确定tet 2和cebpa的联合作用。在三分之一的CEBPA突变的AML患者中，导致白血病发展的其他突变是未知的。我们的项目还将研究哪些其他基因可能在CEBPA突变AML的发展中起重要作用。我们将通过对已经发表的关于散发性AML的DNA测序数据以及我们在Barts癌症研究所的合作者对8例家族性CEBPA突变AML患者进行的工作进行系统回顾来做到这一点。然而，迄今为止，只有17例CEBPA病例进行了完整的DNA测序。我们有一个超过100例患者样本的大型队列，我们将通过NGS收集有关AML突变情况的进一步信息。这将与我们对cebpa/tet 2突变斑马鱼的研究平行进行。这些测序研究的目的是全面确定CEBPA突变的AML中哪些基因发生了复发突变，并将其与患者的临床结果相关联，并利用这些信息在我们的斑马鱼cebpa模型中进行功能评估。

项目成果

In trans early mosaic mutational escape and novel phenotypic features of germline SAMD9 mutation.

反式早期嵌合突变逃逸和种系 SAMD9 突变的新表型特征。

• DOI: 10.1111/bjh.16322
• 发表时间: 2020
• 期刊: British journal of haematology
• 影响因子: 6.5
• 作者: Hockings C

The complex genetic landscape of familial MDS and AML reveals pathogenic germline variants

• DOI: 10.1038/s41467-020-14829-5
• 发表时间: 2020-02-25
• 期刊: NATURE COMMUNICATIONS
• 影响因子: 16.6
• 作者: Rio-Machin, Ana;Vulliamy, Tom;Dokal, Inderjeet
• 通讯作者: Dokal, Inderjeet

A versatile automated high-throughput drug screening platform for zebrafish embryos

斑马鱼胚胎多功能自动化高通量药物筛选平台

• DOI: 10.1101/2020.12.16.423108
• 发表时间: 2020
• 作者: Lubin A