The collaborative computational project for NMR (CCPN): supporting biological NMR for the biosciences, medicine and industry.
The collaborative computational project for NMR (CCPN): supporting biological NMR for the biosciences, medicine and industry.
批准号:
MR/V000950/1
负责人:
Geerten Vuister
金额:
$213.97万
依托单位:
依托单位国家:
英国
项目类别:
Research Grant
财政年份:
2021
资助国家:
英国
项目状态:
未结题
起止时间:
2021 至 --
中文摘要
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英文摘要
Structural biology concerns the study of the three-dimensional structure of biological macromolecules and their interactions. Biomolecular Nuclear Magnetic Resonance (NMR) spectroscopy is one of three core techniques in structural biology, and highly complementary to the other two, i.e. X-ray crystallography and Cryo EM. Extracting information from NMR data has traditionally been complex and non-intuitive. Many smart and innovative tools have been developed, which unfortunately often have been disconnected and not well integrated and sometimes hard to use. For nearly two decades, the Collaborative Computational Project for NMR (CCPN) has been central in providing a connecting interface between the NMR data and many of these tools. CCPN also actively promotes the sharing and exchange of knowledge and best practices. CCPN also actively engages with the UK and international research communities in all matters relating to research funding and policies. The CCPN aims to continue its immense value to the scientific community over the next 5 years by pursuing the following specific objectives:1. Development of software relevant for NMRCCPN will improve, maintain and expand its programmes, to provide for new functionalities, improved handling, and better speeds. Through fortnightly updates and regular new releases, we will ensure the proper functioning of the software across multiple platforms. We will continuously work on interoperability of our software with other NMR programmes and implement relevant tools for reporting and research data management.2. NMR in support of Biological SciencesWe will facilitate and implement the latest computational tools and developments for NMR data analysis, automation, structure generation and validation.3. NMR in support of MedicineNMR metabolomics is a thriving field that generates crucial knowledge on metabolic pathways from cells to organisms, including humans. We have designed AnalysisMetabolomics to leverage its power and we will focus on tools for non-expert users, streamlined annotation, assignment, metadata and deposition in public repositories.4. NMR in support of IndustryIn collaboration with industrial and academic partners, we will test and enhance applications that are useful to industry. Examples are AnalysisScreen, small-molecule (NMR-assisted) docking procedures to optimise workflows and efficiency and ChemBuild to assist with fragment-based drug discovery.5. Outreach and trainingThrough its active outreach programme, engaging with all stakeholders including national and major international NMR facilities, CCPN will promote the continuous exchange of knowledge, provide training and support the adoption of best practices in NMR. There is a growing body of "how to" videos available on the website. CCPN will actively continue to promote and develop community data standards (NEF), and will take a leading role in discussions on research funding and policies.CCPN will continue its crucial role as intermediary between the UK and international NMR community, by fostering contacts with (inter-)national NMR facilities, other CCPs, the international wwPDB and NEF efforts.To strengthen the UK NMR community, we will continue the successful series of UK CCPN conferences and teaching programs, our comprehensive help and support for CCPN users, participate in international efforts in knowledge sharing and exchange of best practices, and engage in training and teaching through workshops, papers and (video) tutorials.In short, CCPN will continue to make a crucial difference to the biological NMR community in different fields such as Medicine and Industry as well as its traditional base of the biological sciences by acting as a focal point for technology development, collaboration and sharing best practices. Ultimately, researchers who are empowered with the best tools have more time to make new discoveries.
期刊论文(4)
专著(0)
科研奖励(0)
会议论文
On The Importance of Open-Source Databases for NMRBased Metabolomics
论开源数据库对于基于 NMR 的代谢组学的重要性
DOI:
10.34297/ajbsr.2023.18.002455
发表时间:
2023
期刊:
American Journal of Biomedical Science & Research
影响因子:
--
作者:
[Vuister G]
通讯作者:
Vuister G
DOI:
10.3389/fmolb.2022.834453
发表时间:
2022
期刊:
Frontiers in molecular biosciences
影响因子:
5
作者:
[Mureddu LG, Vuister GW]
通讯作者:
Vuister GW
Biochemistry and pathophysiology of the Transient Potential Receptor Vanilloid 6 (TRPV6) calcium channel.
瞬时电位受体 Vanilloid 6 (TRPV6) 钙通道的生物化学和病理生理学。
DOI:
10.1016/bs.acc.2022.11.002
发表时间:
2023
期刊:
Advances in clinical chemistry
影响因子:
--
作者:
[Walker V]
通讯作者:
Walker V
The dynamic ensemble: exploring accessible conformational space
-
批准号:BB/P002692/1
-
项目类别:Research Grant
-
资助金额:$37.32万
-
财政年份:2018
-
负责人:Geerten Vuister
-
依托单位:
A Coordinated Infrastructure for NMR in the Physical and Life Sciences: Upgrade of the Leicester 800MHz NMR for Structural Biology and Drug Discovery
-
批准号:EP/R029997/1
-
项目类别:Research Grant
-
资助金额:$118.27万
-
财政年份:2018
-
负责人:Geerten Vuister
-
依托单位:
The Collaborative Computational Project for NMR (CCPN): data analysis, integration and partnerships for NMR in the biosciences
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批准号:MR/P00038X/1
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项目类别:Research Grant
-
资助金额:$117.23万
-
财政年份:2016
-
负责人:Geerten Vuister
-
依托单位:
The Collaborative Computational Project for NMR (CCPN): Supporting biomolecular NMR and community driven NMR software development.
-
批准号:MR/L000555/1
-
项目类别:Research Grant
-
资助金额:$96.22万
-
财政年份:2013
-
负责人:Geerten Vuister
-
依托单位:
US-UK partnership in NMR structure validation
-
批准号:BB/K021249/1
-
项目类别:Research Grant
-
资助金额:$3.9万
-
财政年份:2013
-
负责人:Geerten Vuister
-
依托单位:
Validation of biomacromolecular structures determined by NMR spectroscopy and deposited in the Protein Data Bank
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批准号:BB/J007897/1
-
项目类别:Research Grant
-
资助金额:$40.53万
-
财政年份:2012
-
负责人:Geerten Vuister
-
依托单位:
国内基金
海外基金
物体运动对流场扰动的数学模型研究
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批准号:51072241
-
项目类别:专项基金项目
-
资助金额:10.0万元
-
批准年份:2010
-
负责人:李廷秋
-
依托单位:
Computational Methods for Analyzing Toponome Data
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批准号:60601030
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项目类别:青年科学基金项目
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资助金额:17.0万元
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批准年份:2006
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负责人:Axel Mosig
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依托单位: