NUCLEOTIDE DEPENDENT MOVEMENTS OF KINESIN MOTOR DOMAIN: SIMULATED ANNEALING

驱动蛋白运动域的核苷酸依赖性运动：模拟退火

• 批准号: 6282422
• 负责人: WILLY R WRIGGERS
• 金额: $ 2.31万
• 依托单位: UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN
• 依托单位国家: 美国
• 财政年份: 1998
• 资助国家: 美国
• 起止时间: 1998-08-01 至 1999-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6282422
• 关键词: biomedical resource; computers; enzymes; model design /development; musculoskeletal system; proteins; structural biology; technology /technique

The structure of an ATP-bound kinesin motor domain has been predicted and conformational differences relative to the known ADP-bound form of the protein were identified,* as reported in reference [96]. The differences should be attributed to force-producing ATP hydrolysis. Candidate ATP-kinesin structures were obtained by simulated annealing, by placement of the ATP gamma-phosphate in the crystal structure of ADP-kinesin, and by inter-atomic distance constraints. The choice of such constraints was based on mutagenesis experiments, which identified Gly234 as one of the gamma-phosphate sensing residues, as well as on structural comparison of kinesin with the homologous ncd motor and with G proteins. The prediction of nucleotide-dependent conformational differences reveals an allosteric coupling between the nucleotide pocket and the microtubule binding site of kinesin. Interactions of ATP with Gly234 and Ser202 trigger structural changes in the motor domain, the nucleotide acting as an allosteric modifier of kinesin's microtubule-binding state. We suggest that in the presence of ATP kinesin's putative microtubule binding regions (L8, L12, L11, alpha4, alpha5 and alpha6) form a face complementary in shape to the microtubule surface. In the presence of ADP, the microtubule binding face adopts a more convex shape relative to the ATP-bound form, reducing kinesin's affinity to the microtubule.

ATP结合的驱动蛋白运动域的结构已被 预测和构象差异相对于已知的 鉴定了蛋白质的ADP结合形式，* 如在 参考文献[96]。 这些差异应归因于 产生ATP水解的力。 候选的ATP驱动蛋白结构是 通过模拟退火获得，通过放置ATP ADP-驱动蛋白的晶体结构中的γ-磷酸， 原子间距离约束。 这种约束的选择是 基于诱变实验，将Gly 234鉴定为 γ-磷酸盐敏感残基，以及结构上的 驱动蛋白与同源ncd马达和G proteins. 核苷酸依赖构象的预测 差异揭示了核苷酸之间的变构偶联 口袋和驱动蛋白的微管结合位点。 相互作用 ATP与Gly 234和Ser 202触发运动中的结构变化 结构域，作为驱动蛋白的变构修饰剂的核苷酸， 微管结合状态。 我们认为，在ATP存在的情况下， 驱动蛋白的推定微管结合区（L 8，L12，L11，α 4， α 5和α 6）形成形状与所述表面互补的面， 微管表面 在ADP存在下，微管结合 面采用相对于ATP结合形式更凸的形状， 降低了驱动蛋白对微管的亲和力。