GENETIC & MOLECULAR STUDIES OF NEMATODE MRNA DEGRADATION

基因

• 批准号: 6180451
• 负责人: Philip Anderson
• 金额: $ 30.42万
• 依托单位: UNIVERSITY OF WISCONSIN-MADISON
• 依托单位国家: 美国
• 财政年份: 1994
• 资助国家: 美国
• 起止时间: 1994-05-01 至 2003-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6180451
• 关键词: Caenorhabditis elegans; RNA binding protein; RNA splicing; enzyme substrate; gene expression; genetic regulation; genetic translation; immunoprecipitation; mass spectrometry; messenger RNA; molecular cloning; mutant; nucleic acid metabolism; nucleic acid sequence; phosphoprotein phosphatase; phosphorylation; polymerase chain reaction; protein kinase; protein localization; protein protein interaction; protein purification; representational difference analysis; site directed mutagenesis

The steady-state levels of eukaryotic mRNAs are dictated by their relative rates of synthesis and degradation. While we know a great deal about molecular mechanisms of transcriptional control, our understanding of mRNA degradation is sketchy by comparison. mRNA stability is an important control point for both constitutive and regulated gene expression. Decay of individual mRNAs is determined by the interplay of specific cis-acting elements and trans-acting factors. Cis-acting elements control decay of mRNAs in which they reside, while trans-acting factors interact with those elements and with other cellular processes, especially the translational apparatus. Numerous cis-acting sequences important for mRNA decay have been defined, but how these elements, together with their trans-acting factors, accomplish selective mRNA turnover is poorly understood. Most mRNA turnover is intimately coupled to translation. This is particularly clear in the case of nonsense mutant mRNAs. mRNAs that contain premature stop codons are unstable in all eukaryotes tested, including humans. We will study this phenomenon, termed "nonsense-mediated mRNA decay" (NMD) in the nematode Caenorhabditis elegans. Loss-of-function mutations affecting any of seven different genes (smg-1 through smg-7) eliminate NMD throughout the animal. Thus, smg genes encode trans-acting factors required for NMD. Our work is designed to answer three general questions: What are the smg gene products? With what do they interact? What are the natural targets of NMD in wild-type nematodes? Our methods combine genetic, molecular, and biochemical investigations of smg genes and their encoded proteins. Our long-range goals are to understand the molecular mechanisms of mRNA turnover and the biological roles of NMD. Our experiments contribute to these goals by identifying proteins that are required for NMD, describing their biochemical associations in the cell, and investigating the role of smg genes in normal gene expression. NMD is a universal phenomenon and contributes to the severity of certain human genetic diseases. Understanding the mechanisms of NMD and the functions of smg genes in C. elegans will contribute to understanding the etiology of these and other diseases.

真核生物mRNA的稳态水平由其合成和降解的相对速率决定。 虽然我们对转录控制的分子机制了解很多，但相比之下，我们对mRNA降解的理解是粗略的。mRNA稳定性是组成型和调控型基因表达的重要控制点。 个别mRNA的衰变是由特定的顺式作用元件和反式作用因子的相互作用决定的。 顺式作用元件控制它们所在的mRNA的衰变，而反式作用因子与这些元件和其他细胞过程，特别是翻译装置相互作用。 许多顺式作用序列的重要mRNA衰变已被确定，但如何这些元素，连同他们的反式作用因子，完成选择性mRNA周转知之甚少。 大多数mRNA周转与翻译密切相关。 这在无义突变体mRNA的情况下尤其明显。 含有提前终止密码子的mRNA在所有测试的真核生物（包括人类）中是不稳定的。 我们将研究这种现象，称为“无义介导的mRNA衰变”（NMD）在线虫秀丽隐杆线虫。 影响七种不同基因（smg-1至smg-7）中任何一种的功能丧失突变会消除整个动物的NMD。 因此，smg基因编码NMD所需的反式作用因子。 我们的工作旨在回答三个一般性问题：什么是smg基因产物？ 他们用什么互动？ NMD在野生型线虫中的天然靶标是什么？ 我们的方法结合了联合收割机对smg基因及其编码蛋白的遗传、分子和生物化学研究。我们的长期目标是了解mRNA周转的分子机制和NMD的生物学作用。 我们的实验通过鉴定NMD所需的蛋白质，描述它们在细胞中的生物化学联系，并研究smg基因在正常基因表达中的作用，为这些目标做出了贡献。 NMD是一种普遍现象，并导致某些人类遗传疾病的严重性。了解NMD的发病机制和smg基因在C.线虫的研究将有助于了解这些和其他疾病的病因。